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VEuPathDB / EdaPhaseOneNewIssuesOLD

A skeletal repo that contains new EDA issues that are not yet initially reviewed by the dev team
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Bug in subsetting GEMS1 #194

Closed nkittur-uga closed 3 years ago

nkittur-uga commented 3 years ago

GEMS1 study

  1. Clicked on Case or control participant- selected "case"
  2. Clicked on Study timepoint- selected "enrollment"
  3. Clicked on Length- or height-for-age z-score

I got the spinning loading wheel for several minutes and then this error:

Error: 502 Proxy Error <!DOCTYPE HTML PUBLIC "-//IETF//DTD HTML 2.0//EN">

502 Proxy Error

Proxy Error

The proxy server received an invalid response from an upstream server.
The proxy server could not handle the request POST /eda-data/studies/GEMSCC0003-1/entities/EUPATH_0000738/variables/EUPATH_0015710/distribution.

Reason: Error reading from remote server

danicahelb commented 3 years ago

Also:

GEMS1 study

  1. Clicked on Case or control participant- selected "case"
  2. Clicked on Study timepoint- selected "enrollment" --> counts in the entity diagram for participant repeated measures did not update after we selected: Study timepoint- "enrollment"

I tried it the other way around:

  1. Clicked on Study timepoint- selected "enrollment"
  2. Clicked on Case or control participant- selected "case" --> --> counts in the entity diagram for participant did not update after we selected: Case or control participant- "case"
dmfalke commented 3 years ago

Here is some POST data for the first example above:

{"valueSpec":"count","filters":[{"entityId":"EUPATH_0000096","variableId":"EUPATH_0010375","stringSet":["Case"],"type":"stringSet"},{"entityId":"EUPATH_0000738","variableId":"OBI_0001508","stringSet":["Enrollment"],"type":"stringSet"}],"binSpec":{"displayRangeMin":-30,"displayRangeMax":20,"binWidth":0.09}}
ryanrdoherty commented 3 years ago

I believe this has resolved on its own. Maybe the study was being reloaded at the time?

bobular commented 3 years ago

I confirm Ryan's observation on qa. (I remember GEMS1 not being available yesterday for a bit too.) Closing this ticket.

nkittur-uga commented 3 years ago

Yes, this bug seems to have resolved on its own.

Danica, regarding your comment on subsetting, all cases have enrollment data so the counts don't change if you select both "case" and "enrollment". I can explain on slack if needed.

QA is complete.