VEuPathDB / EdaSubsettingService

A REST service to provide data and subsetting in the Exploratory Data Analysis Workspace
Apache License 2.0
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Map Imputing Zeroes: Support new variable annotations #113

Open d-callan opened 1 year ago

d-callan commented 1 year ago

the new annotations are:

  1. hasStudyDependentVocabulary w either true/false or yes/no values (@bobular would know i suppose) on variables (on the sample entity).
  2. variableSpecToImputeZeroesFor is also on variables (on the sample entity) w values like 'entityId.variableId' which tell us since these data are tall where the zero value actually goes.
d-callan commented 1 year ago

also worth coordinating w @jbrestel, who was talking about changing the way the variable annotations are handled in the db iirc

bobular commented 1 year ago

There's also weightingVariableSpec - it doesn't seem to have a ticket but there is code to support it in veupathUtils