`2024-05-10 18:14:18.605426 New output file written: boxplot2be432ea66d.json
Rserve started in non-daemon mode.
[1] "starting beta diversity computation"
2024-05-10 21:11:45.457686 Received df table with 1 samples and 46 taxa.
2024-05-10 21:11:45.476168 Computed dissimilarity matrix.
Error in data.frame(eig[1:k], rel.eig, bs, cum.eig, cum.bs) :
row names contain missing values
In addition: Warning messages:
1: replacing previous import ‘veupathUtils::toJSON’ by ‘jsonlite::toJSON’ when loading ‘plot.data’
2: In data.table::fread("beta_div_input", select = c(MBIOTEMP_Source.Sour_stable_id = "double", :
Attempt to override column 1 <> of inherent type 'string' down to 'float64' ignored. Only overrides to a higher type are currently supported. If this was intended, please coerce to the lower type afterwards.
`
i tried sharing the UD with dcallan@upenn.edu, so @d-callan can access this analysis: https://microbiomedb.org/analysis/QHgdUeZ
change param value to trigger a new compute
the error in rserve:
`2024-05-10 18:14:18.605426 New output file written: boxplot2be432ea66d.json Rserve started in non-daemon mode. [1] "starting beta diversity computation"
2024-05-10 21:11:45.457686 Received df table with 1 samples and 46 taxa.
2024-05-10 21:11:45.476168 Computed dissimilarity matrix. Error in data.frame(eig[1:k], rel.eig, bs, cum.eig, cum.bs) : row names contain missing values In addition: Warning messages: 1: replacing previous import ‘veupathUtils::toJSON’ by ‘jsonlite::toJSON’ when loading ‘plot.data’ 2: In data.table::fread("beta_div_input", select = c(MBIOTEMP_Source.Sour_stable_id = "double", : Attempt to override column 1 <> of inherent type 'string' down to 'float64' ignored. Only overrides to a higher type are currently supported. If this was intended, please coerce to the lower type afterwards.
`