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VEuPathDB / microbiomeComputations

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Adding MaAsLin2 to diff abund options #44

Closed asizemore closed 1 year ago

asizemore commented 1 year ago

MaAsLin2 is appropriate for the pathway and enzyme abundance outputs from HUMAnN3. Let's add it to the options!

Currently in draft for testing purposes ONLY. If we agree that we want to use this method, I'll make a new method for the AbundanceData class or somehow allow maaslin2 as option if the data is abundance but not absolute abundance.

asizemore commented 1 year ago

Decided the maaslin solution is not needed for the first roll out of diff abund. Will revisit once correlation app is out.