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VEuPathDB
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microbiomeComputations
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diff abund results doesnt meet the api
#38
asizemore
closed
1 year ago
0
implement dropZeroColumns
#37
asizemore
closed
1 year ago
9
diff abund: what to do with lonely pointIds?
#36
asizemore
closed
1 year ago
4
Add ANCOMBC
#35
asizemore
opened
1 year ago
0
Add differential abundance function
#34
asizemore
closed
1 year ago
1
add correlation function
#33
asizemore
closed
11 months ago
1
add differential abundance function
#32
asizemore
closed
1 year ago
3
beta div: Some collection variables have missing values in the distance matrix
#31
asizemore
closed
1 year ago
13
Beta div using binary distance?
#30
asizemore
opened
1 year ago
0
compute api
#29
d-callan
closed
1 year ago
0
refactor for compute service integration
#28
d-callan
closed
1 year ago
1
refactor computedVariable attr
#27
d-callan
closed
1 year ago
0
Refactor using S4 classes
#26
d-callan
closed
1 year ago
1
betaDiv refactor
#25
d-callan
closed
1 year ago
2
Collection data sent to ranked abundance do not all have ranges [0, 1]
#24
asizemore
opened
2 years ago
4
alpha diversity: do not always set range to be [0, 1]
#23
asizemore
closed
1 year ago
1
Return nicer error message when all ranked abundance ranking values are 0
#22
asizemore
opened
2 years ago
6
break beta div into two computations
#21
asizemore
opened
2 years ago
0
Improve computed variables response structure
#20
asizemore
closed
1 year ago
2
Computed var ids are consistent
#19
asizemore
closed
1 year ago
1
move isCutoff to computedVariableMetadata
#18
asizemore
closed
2 years ago
3
Apps: displayRange min and max should be numbers
#17
asizemore
closed
2 years ago
2
Beta diversity app: refactor to better fit compute plugin
#16
asizemore
closed
1 year ago
2
ranked abundance: collections with one var give 500
#15
asizemore
closed
2 years ago
4
Return abundance title based on cutoff
#14
asizemore
closed
2 years ago
3
Return display order with ranked abundance
#13
asizemore
closed
2 years ago
5
Handle NAs
#12
asizemore
closed
2 years ago
2
add naToValue arg
#11
asizemore
closed
2 years ago
2
Mbio: add argument for imputing 0s
#10
asizemore
closed
2 years ago
1
fixes for initial alpha div run
#9
asizemore
closed
2 years ago
1
update documentation and minor cleaning
#8
asizemore
closed
2 years ago
0
Tech Debt: improve naming
#7
asizemore
closed
1 year ago
2
add collection type
#6
asizemore
closed
2 years ago
0
match subsetting api language in computedVariableMetadata
#5
asizemore
closed
2 years ago
0
Tech debt: Documentation
#4
asizemore
closed
2 years ago
0
Add phase 1 apps
#3
asizemore
closed
2 years ago
3
Add mbio apps
#2
asizemore
closed
2 years ago
0
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