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VEuPathDB / service-multi-blast

Async BLAST+ query service and supporting libraries.
Apache License 2.0
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jobs endpoint not reading the workspace status flag #158

Closed aurreco-uga closed 2 years ago

aurreco-uga commented 2 years ago

this happens hen a user uses a sequence like below: (lots of dashes)

MS------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------WR-----
--------------------------------------------------------------------------------
--------ARFTPC------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------VASLTVWL----------
-------------------------------NPK-D----------P----NC-FGVRNWW-----RN---NLPE-LQL-
-LNPFC-----SFT-IQE---L--------SF------G-----EPH-----MYINY-----------------------
---------------T-----------------------------PT--------DQRMIRL-------A-------GAT
--------------------------------------------------------------------------------
---------------------------E-DE-CEDIMEACITYGMNHA----------------IIERPRTDD--GGDLI
----------------------------NQPAITSFGYTESFMSK-L---EVSPPADIGQRTPEG----

when executing this in the browser (uses a similar query): https://plasmodb.org/plasmo/app/workspace/blast/result/0771a5a0b24643e51742dd5ca8c6de61

the blast program fails execution , and the job is marked as .failed in the workspace (see below).

the client sends a request: https://plasmodb.org/multi-blast/jobs/72d4408d4fe0e69ad2bb0e0fe82762e3 that returns the job as "complete" but the workspace has it as .failed:

/ # ls -la /out/0771a5a0b24643e51742dd5ca8c6de61 total 268 drwxr-xr-x 3 root root 4096 Aug 16 17:57 . drwxr-xr-x 2014 root root 249856 Aug 16 18:10 .. -rw-r--r-- 1 root root 0 Aug 12 14:54 .failed drwxr-xr-x 2 root root 4096 Aug 12 14:55 7178a1ad66c92b19cb42f37068f5899b -rw-r--r-- 1 root root 143 Aug 12 14:54 error.txt -rw-r--r-- 1 root root 0 Aug 12 14:54 log.txt -rw-r--r-- 1 root root 1155 Aug 12 14:54 query.txt -rw-r--r-- 1 root root 320 Aug 12 14:54 report.asn1

aurreco-uga commented 2 years ago

tag 1.7.24, but it needs some client work to react to the new errored status