Open Foxcapades opened 1 year ago
Figure out what we can do, if anything, about these.
time="2022-12-06T09:25:58.690095173-05:00" level=debug msg="/blast/bin/blast_formatter -archive=../report.asn1 -out=report.txt" job-id=589327a331ba98232b14d66b02a74379 report-id=4a38e9600b46476059ef71caf1d2fb02 request-id=zjwAYPF4g time="2022-12-06T09:25:58.690202346-05:00" level=debug msg="Command: /blast/bin/blast_formatter -archive=../report.asn1 -out=report.txt" job-id=589327a331ba98232b14d66b02a74379 report-id=4a38e9600b46476059ef71caf1d2fb02 request-id=zjwAYPF4g Error: (308.5) [blast4] Service not found Error: (301.5) [CONN_Open(blast4)] Failed to open connection: Closed Error: (315.4) CConn_Streambuf::overflow(): CONN_Write() failed (blast4): Closed Error: (315.4) CConn_Streambuf::overflow(): CONN_Write() failed (blast4): Closed Error: (315.4) CConn_Streambuf::overflow(): CONN_Write() failed (blast4): Closed Error: (802.5) CObjectOStream: error at byte 118: stack is empty: cannot close output stream Error: (CIOException::eFlush) COStreamBuffer::Flush: failed Error: (CSerialException::eIoError) byte 118: cannot close output stream Error: (802.4) Cannot close serializing output stream (CSerialException::eIoError) byte 118: cannot close output stream Error: (308.5) [blast4] Service not found Error: (301.5) [CONN_Open(blast4)] Failed to open connection: Closed Error: (315.4) CConn_Streambuf::overflow(): CONN_Write() failed (blast4): Closed Error: (315.4) CConn_Streambuf::overflow(): CONN_Write() failed (blast4): Closed Error: (315.4) CConn_Streambuf::overflow(): CONN_Write() failed (blast4): Closed Error: (802.5) CObjectOStream: error at byte 118: stack is empty: cannot close output stream Error: (CIOException::eFlush) COStreamBuffer::Flush: failed Error: (CSerialException::eIoError) byte 118: cannot close output stream Error: (802.4) Cannot close serializing output stream (CSerialException::eIoError) byte 118: cannot close output stream Error: (308.5) [blast4] Service not found Error: (301.5) [CONN_Open(blast4)] Failed to open connection: Closed Error: (315.4) CConn_Streambuf::overflow(): CONN_Write() failed (blast4): Closed Error: (315.4) CConn_Streambuf::overflow(): CONN_Write() failed (blast4): Closed Error: (315.4) CConn_Streambuf::overflow(): CONN_Write() failed (blast4): Closed Error: (802.5) CObjectOStream: error at byte 118: stack is empty: cannot close output stream Error: (CIOException::eFlush) COStreamBuffer::Flush: failed Error: (CSerialException::eIoError) byte 118: cannot close output stream Error: (802.4) Cannot close serializing output stream (CSerialException::eIoError) byte 118: cannot close output stream Error: NCBI C++ Exception: T0 "/root/ncbi-blast-2.10.1+-src/c++/src/serial/rpcbase.cpp", line 237: Error: (CRPCClientException::eFailed) ncbi::CRPCClient_Base::x_Ask() - Failed to receive reply after 3 tries (Blast4-request) time="2022-12-06T09:25:59.245309812-05:00" level=error msg="exit status 255" job-id=589327a331ba98232b14d66b02a74379 report-id=4a38e9600b46476059ef71caf1d2fb02 request-id=zjwAYPF4g
time="2022-11-03T15:07:28.029834577-04:00" level=debug msg="/blast/bin/blast_formatter -archive=../report.asn1 -outfmt=15 -out=report.json" job-id=d1ed667b898f133e8c5f9b2a9944b332 report-id=f5dd452d867bfaeaac9e8d2c697bf380 request-id=jc004ivVg time="2022-11-03T15:07:28.029937066-04:00" level=debug msg="Command: /blast/bin/blast_formatter -archive=../report.asn1 -outfmt=15 -out=report.json" job-id=d1ed667b898f133e8c5f9b2a9944b332 report-id=f5dd452d867bfaeaac9e8d2c697bf380 request-id=jc004ivVg Warning: (302.106) [SOCK_gethostbyname] Failed gethostbyname_r("www.ncbi.nlm.nih.gov") {error=200002,Host name lookup failure} Error: (302.22) SSOCK#1000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") Error: (303.7) [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=blast4&address=643898644faf(10.70.5.3)&platform=x86_64-unknown-linux-gnu] Failed to connect: Unknown Warning: (301.21) [CONN_Flush(HTTP; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=blast4&address=643898644faf(10.70.5.3)&platform=x86_64-unknown-linux-gnu)] Failed to flush: Unknown Error: (304.5) [blast4] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=blast4&address=643898644faf(10.70.5.3)&platform=x86_64-unknown-linux-gnu": Unknown Error: (308.5) [blast4] Service not found Error: (301.5) [CONN_Open(blast4)] Failed to open connection: Closed Error: (315.4) CConn_Streambuf::overflow(): CONN_Write() failed (blast4): Closed Error: (315.4) CConn_Streambuf::overflow(): CONN_Write() failed (blast4): Closed Error: (315.4) CConn_Streambuf::overflow(): CONN_Write() failed (blast4): Closed Error: (802.5) CObjectOStream: error at byte 118: stack is empty: cannot close output stream Error: (CIOException::eFlush) COStreamBuffer::Flush: failed Error: (CSerialException::eIoError) byte 118: cannot close output stream Error: (802.4) Cannot close serializing output stream (CSerialException::eIoError) byte 118: cannot close output stream Warning: (302.106) [SOCK_gethostbyname] Failed gethostbyname_r("www.ncbi.nlm.nih.gov") {error=200002,Host name lookup failure} Error: (302.22) SSOCK#2000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") Error: (303.7) [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=blast4&address=643898644faf(10.70.5.3)&platform=x86_64-unknown-linux-gnu] Failed to connect: Unknown Warning: (301.21) [CONN_Flush(HTTP; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=blast4&address=643898644faf(10.70.5.3)&platform=x86_64-unknown-linux-gnu)] Failed to flush: Unknown Error: (304.5) [blast4] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=blast4&address=643898644faf(10.70.5.3)&platform=x86_64-unknown-linux-gnu": Unknown Error: (308.5) [blast4] Service not found Error: (301.5) [CONN_Open(blast4)] Failed to open connection: Closed Error: (315.4) CConn_Streambuf::overflow(): CONN_Write() failed (blast4): Closed Error: (315.4) CConn_Streambuf::overflow(): CONN_Write() failed (blast4): Closed Error: (315.4) CConn_Streambuf::overflow(): CONN_Write() failed (blast4): Closed Error: (802.5) CObjectOStream: error at byte 118: stack is empty: cannot close output stream Error: (CIOException::eFlush) COStreamBuffer::Flush: failed Error: (CSerialException::eIoError) byte 118: cannot close output stream Error: (802.4) Cannot close serializing output stream (CSerialException::eIoError) byte 118: cannot close output stream Warning: (302.106) [SOCK_gethostbyname] Failed gethostbyname_r("www.ncbi.nlm.nih.gov") {error=200002,Host name lookup failure} Error: (302.22) SSOCK#1000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") Error: (303.7) [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=blast4&address=643898644faf(10.70.5.3)&platform=x86_64-unknown-linux-gnu] Failed to connect: Unknown Warning: (301.21) [CONN_Flush(HTTP; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=blast4&address=643898644faf(10.70.5.3)&platform=x86_64-unknown-linux-gnu)] Failed to flush: Unknown Error: (304.5) [blast4] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=blast4&address=643898644faf(10.70.5.3)&platform=x86_64-unknown-linux-gnu": Unknown Error: (308.5) [blast4] Service not found Error: (301.5) [CONN_Open(blast4)] Failed to open connection: Closed Error: (315.4) CConn_Streambuf::overflow(): CONN_Write() failed (blast4): Closed Error: (315.4) CConn_Streambuf::overflow(): CONN_Write() failed (blast4): Closed Error: (315.4) CConn_Streambuf::overflow(): CONN_Write() failed (blast4): Closed Error: (802.5) CObjectOStream: error at byte 118: stack is empty: cannot close output stream Error: (CIOException::eFlush) COStreamBuffer::Flush: failed Error: (CSerialException::eIoError) byte 118: cannot close output stream Error: (802.4) Cannot close serializing output stream (CSerialException::eIoError) byte 118: cannot close output stream Warning: (302.106) [SOCK_gethostbyname] Failed gethostbyname_r("www.ncbi.nlm.nih.gov") {error=200002,Host name lookup failure} Error: (302.22) SSOCK#3000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") Error: (303.7) [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=blast4&address=643898644faf(10.70.5.3)&platform=x86_64-unknown-linux-gnu] Failed to connect: Unknown Warning: (301.21) [CONN_Flush(HTTP; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=blast4&address=643898644faf(10.70.5.3)&platform=x86_64-unknown-linux-gnu)] Failed to flush: Unknown Error: (304.5) [blast4] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=blast4&address=643898644faf(10.70.5.3)&platform=x86_64-unknown-linux-gnu": Unknown Error: (308.5) [blast4] Service not found Error: (301.5) [CONN_Open(blast4)] Failed to open connection: Closed Error: (315.4) CConn_Streambuf::overflow(): CONN_Write() failed (blast4): Closed Error: (315.4) CConn_Streambuf::overflow(): CONN_Write() failed (blast4): Closed Error: (315.4) CConn_Streambuf::overflow(): CONN_Write() failed (blast4): Closed Error: (802.5) CObjectOStream: error at byte 118: stack is empty: cannot close output stream Error: (CIOException::eFlush) COStreamBuffer::Flush: failed Error: (CSerialException::eIoError) byte 118: cannot close output stream Error: (802.4) Cannot close serializing output stream (CSerialException::eIoError) byte 118: cannot close output stream Error: NCBI C++ Exception: T0 "/root/ncbi-blast-2.10.1+-src/c++/src/serial/rpcbase.cpp", line 237: Error: (CRPCClientException::eFailed) ncbi::CRPCClient_Base::x_Ask() - Failed to receive reply after 3 tries (Blast4-request) time="2022-11-03T15:07:58.132581919-04:00" level=error msg="exit status 255" job-id=d1ed667b898f133e8c5f9b2a9944b332 report-id=f5dd452d867bfaeaac9e8d2c697bf380 request-id=jc004ivVg
Warning: (302.106) [SOCK_gethostbyname] Failed gethostbyname_r("www.ncbi.nlm.nih.gov") {error=200002,Host name lookup failure} Error: (302.22) SSOCK#1000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") Error: (303.7) [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=blast4&address=643898644faf(10.70.5.3)&platform=x86_64-unknown-linux-gnu] Failed to connect: Unknown Warning: (301.21) [CONN_Flush(HTTP; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=blast4&address=643898644faf(10.70.5.3)&platform=x86_64-unknown-linux-gnu)] Failed to flush: Unknown Error: (304.5) [blast4] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=blast4&address=643898644faf(10.70.5.3)&platform=x86_64-unknown-linux-gnu": Unknown Error: (308.5) [blast4] Service not found Error: (301.5) [CONN_Open(blast4)] Failed to open connection: Closed Error: (315.4) CConn_Streambuf::overflow(): CONN_Write() failed (blast4): Closed Error: (315.4) CConn_Streambuf::overflow(): CONN_Write() failed (blast4): Closed Error: (315.4) CConn_Streambuf::overflow(): CONN_Write() failed (blast4): Closed Error: (802.5) CObjectOStream: error at byte 118: stack is empty: cannot close output stream Error: (CIOException::eFlush) COStreamBuffer::Flush: failed Error: (CSerialException::eIoError) byte 118: cannot close output stream Error: (802.4) Cannot close serializing output stream (CSerialException::eIoError) byte 118: cannot close output stream
Figure out what we can do, if anything, about these.