VEuPathDB / vdi-service

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Allow bigger file name size (URL) on upload #293

Closed aurreco-uga closed 5 months ago

aurreco-uga commented 5 months ago

try a gene list with URL

https://plasmodb.org/plasmo/service/record-types/transcript/searches/GenesByText/reports/attributesTabular
?text_search_organism=%5B%22Hepatocystis%20sp.%20ex%20Piliocolobus%20tephrosceles%202019%22%2C%22Plasmodium%20adleri%20G01%22%2C%22Plasmodium%20berghei%20ANKA%22%2C%22Plasmodium%20billcollinsi%20G01%22%2C%22Plasmodium%20blacklocki%20G01%22%2C%22Plasmodium%20brasilianum%20strain%20Bolivian%20I%22%2C%22Plasmodium%20chabaudi%20chabaudi%22%2C%22Plasmodium%20coatneyi%20Hackeri%22%2C%22Plasmodium%20cynomolgi%20strain%20B%22%2C%22Plasmodium%20cynomolgi%20strain%20M%22%2C%22Plasmodium%20falciparum%203D7%22%2C%22Plasmodium%20falciparum%207G8%22%2C%22Plasmodium%20falciparum%207G8%202019%22%2C%22Plasmodium%20falciparum%20CD01%22%2C%22Plasmodium%20falciparum%20Dd2%22%2C%22Plasmodium%20falciparum%20GA01%22%2C%22Plasmodium%20falciparum%20GB4%22%2C%22Plasmodium%20falciparum%20GN01%22%2C%22Plasmodium%20falciparum%20HB3%22%2C%22Plasmodium%20falciparum%20IT%22%2C%22Plasmodium%20falciparum%20KE01%22%2C%22Plasmodium%20falciparum%20KH01%22%2C%22Plasmodium%20falciparum%20KH02%22%2C%22Plasmodium%20falciparum%20ML01%22%2C%22Plasmodium%20falciparum%20NF135.C10%22%2C%22Plasmodium%20falciparum%20NF166%22%2C%22Plasmodium%20falciparum%20NF54%22%2C%22Plasmodium%20falciparum%20SD01%22%2C%22Plasmodium%20falciparum%20SN01%22%2C%22Plasmodium%20falciparum%20TG01%22%2C%22Plasmodium%20fragile%20strain%20nilgiri%22%2C%22Plasmodium%20gaboni%20strain%20G01%22%2C%22Plasmodium%20gaboni%20strain%20SY75%22%2C%22Plasmodium%20gallinaceum%208A%22%2C%22Plasmodium%20inui%20San%20Antonio%201%22%2C%22Plasmodium%20knowlesi%20strain%20A1H1%22%2C%22Plasmodium%20knowlesi%20strain%20H%22%2C%22Plasmodium%20knowlesi%20strain%20Malayan%20Strain%20Pk1%20A%22%2C%22Plasmodium%20malariae%20UG01%22%2C%22Plasmodium%20ovale%20curtisi%20GH01%22%2C%22Plasmodium%20ovale%20wallikeri%20PowCR01%22%2C%22Plasmodium%20praefalciparum%20strain%20G01%22%2C%22Plasmodium%20reichenowi%20CDC%22%2C%22Plasmodium%20reichenowi%20G01%22%2C%22Plasmodium%20relictum%20SGS1-like%22%2C%22Plasmodium%20vinckei%20Cameroon%20EL%22%2C%22Plasmodium%20vinckei%20brucechwatti%20DA%22%2C%22Plasmodium%20vinckei%20lentum%20DE%22%2C%22Plasmodium%20vinckei%20petteri%20CR%202020%22%2C%22Plasmodium%20vinckei%20petteri%20strain%20CR%22%2C%22Plasmodium%20vinckei%20vinckei%20CY%22%2C%22Plasmodium%20vinckei%20vinckei%20strain%20vinckei%22%2C%22Plasmodium%20vivax%20P01%22%2C%22Plasmodium%20vivax%20PAM%22%2C%22Plasmodium%20vivax%20PvW1%22%2C%22Plasmodium%20vivax%20Sal-1%22%2C%22Plasmodium%20vivax-like%20Pvl01%22%2C%22Plasmodium%20yoelii%20yoelii%2017X%22%2C%22Plasmodium%20yoelii%20yoelii%2017XNL%22%2C%22Plasmodium%20yoelii%20yoelii%2017XNL%202023%22%2C%22Plasmodium%20yoelii%20yoelii%20YM%22%2C%22Plasmodium%20cynomolgi%22%2C%22Plasmodium%20falciparum%22%2C%22Plasmodium%20gaboni%22%2C%22Plasmodium%20knowlesi%22%2C%22Plasmodium%20ovale%22%2C%22Plasmodium%20reichenowi%22%2C%22Plasmodium%20vinckei%22%2C%22Plasmodium%20vivax%22%2C%22Plasmodium%20vivax-like%20sp.%22%2C%22Plasmodium%20yoelii%22%5D
&text_expression=*reductase
&document_type=gene
&text_fields=%5B%22apolloCommentContent%22%2C%22ECNumbers%22%2C%22Epitopes%22%2C%22GeneLinkouts%22%2C%22primary_key%22%2C%22name%22%2C%22gene_type%22%2C%22GeneModelCharacteristics%22%2C%22sequence_id%22%2C%22GOTerms%22%2C%22InterPro%22%2C%22MetabolicPathways%22%2C%22Alias%22%2C%22Notes%22%2C%22organism_full%22%2C%22orthomcl_name%22%2C%22Orthologs%22%2C%22PdbSimilarities%22%2C%22product%22%2C%22Products%22%2C%22PubMed%22%2C%22RodMalPhenotype%22%2C%22so_id%22%2C%22so_term_name%22%2C%22GeneTranscripts%22%2C%22UserCommentContent%22%5D
&reportConfig={"attributes":["primary_key","source_id"],"includeHeader":true,"attachmentType":"plain"}

Or a nepehel URL:

https://main-nephele-prod-userdata.s3.amazonaws.com/12b9b6dd648e/taxa.biom?AWSAccessKeyId=ASIA5ATWSRIU3YBVHAW3&Signature=qCrSGXDrTPMU6xKw8IuGVFNV1XY%3D&x-amz-security-token=IQoJb3JpZ2luX2VjEBEaCXVzLWVhc3QtMSJHMEUCIQCbNEjznbmjtOWv7Nn2QxjqyNLNrCmUDpueIicgGbjdFgIgS4ewk0H8pPe2MSdjZdeBOvfsePRxUaauBJPoTx%2FbdZoq3wMIehAAGgw4OTQ2NzU2MTgzNDUiDAFCF0vt2ouTlhoFRSq8A3ZzgbCV23mvS3dxx24gGKf186LBllwCG72yeOskLhTdZxIpOEYg4jePTfmc2hmY1VQZHfS9IzbRCx0s2U%2FvPDq0cWdxldKv2ncnaKQeJWMeqrXzVujKaIil6TqRGcr6oruTOucwlnFME3B9Uq7S3WQZTwkoTsEit7nnN4bq4ck6A9%2FnO2ItXpe30lFjZdTxNU7XQSjKs%2BbxVQOycUHSTYueQ08MAchuMcYIG7JuwSv1C31YlxnWtwQchCMqX91ADAjemmR5trFHSsuMh6PMJMPyX5wYh2nq9eZTaRazOqwNwpZpuTcXB6ewzscKz4SVHMtSv2aUCbwliHlEmsUJ8UsDPwB8CWoMT0CJV2RuiS%2F3MgiEsgFy4ULYJJfoDPr7z4wPQrNAhmL2QMkyBsAaZnU4m2C%2BTaweLjdT7r2E6OKa12eWI%2BF75tdwM0oiex5yUenbeUD8hAeVjLWSfiLaVBekFXeTKml4txBgC4xfe5zPGXOhwPdfOLX39s2bgodIovSdjusq8MKxwZ3DwN5wWunU4W3sk9UaK4fgHgT1dl3cb%2Bt6mhg%2F0twjHNA1YbyoVkkmwp4M%2FwpUAeOD6zDhhYmyBjqlAfL9ogXjMetzzl%2BjQ0XVrfa0WsoEatKeusd4LUAfvXczAIZ8SNsWPM9D3TP4NKIziZMGEn3jXlIVxUpyc5qPM65kb58bzU3oq9MoxUMPD6qbFsFzqfLdfdC6uA1MTrnqjbdIdRGldebX98RxZFusP%2BeT8NkQK%2BdWpL1Uyca8c%2Bj7YwGqfxgY3RENd9e6wmSZdMStIK4953LwIj8%2FsJhGmiqIrv3ylw%3D%3D&Expires=1715623548

image001

Screenshot 2024-05-13 at 1 15 08 PM

Screenshot 2024-05-13 at 1 10 24 PM

Foxcapades commented 5 months ago

PR merged to fix the file name from URL logic: 4483ff4