Closed golnaz-ltri closed 1 year ago
Hey!
You are probably using the newest version of skimage library. They have changed a couple of functions. Try next thing: go to the microsaa folder > open fibseg file > find to lines with code _skellabels = label(skeleton, neighbors = 8) and _skel_labelspruned = label(pruning, neighbors = 8) > replace the argument neighbors = 8 to connectivity = 2. That should help.
Thank you! This fixed the issue.
Hello, I am trying to replicate the analysis for this package, however when I reach the step for fibers skeletonization and labeling, in the first line of code to define fibre-exe I get a keyword argument error: TypeError: label() got an unexpected keyword argument 'neighbors'
All packages are updated as required.