search

VH-Lab / vhlab-microscopyimageanalysis-matlab

Matlab app for analysis of high density imaging data like that from Array Tomography
0 stars 0 forks source link

Co-localization reports #33

Open stevevanhooser opened 4 years ago

stevevanhooser commented 4 years ago

Should report #paired and #unpaired, especially useful for 3-d colocalization

stevevanhooser commented 4 years ago

@dlwise : I added at_colocalization_summary. Can you check it to see if it provides the outputs you are seeking? The data I got only had 2-way colocalization.

It produces (for me):

[out,msg] = at_colocalization_summary(the_atdir, colname);

out

out =

struct with fields:

          totalA: 89
          totalB: 54
   NumAPaired_ab: 57
   NumBPaired_ab: 45
NumANotPaired_ab: 32
NumBNotPaired_ab: 9
   NumAPaired_ba: 57
   NumBPaired_ba: 45
NumANotPaired_ba: 32
NumBNotPaired_ba: 9

msg =

'AoB:Number of As paired with at least one B: 57; AoB:Number of Bs paired with at least one A: 45; AoB:Number of As not paired with at least one B: 32; AoB:Number of Bs not paired with at least one A: 9; BoA:Number of As paired with at least one B: 57; BoA:Number of Bs paired with at least one A: 45; BoA:Number of As not paired with at least one B: 32; BoA:Number of Bs not paired with at least one A: 9; '