Motif-Informed Network Inference based on Accessible Chromatin (MINI-AC) is a method that combines accessible chromatin data from bulk or single-cell experiments with transcription factor binding site enrichment to learn gene regulatory networks in plants
An integral update surrounding the GO enrichment step of MINI-AC is necessary, which includes:
Updated the gene-GO files of both Arabidopsis and maize - related with issues #16 and #17.
Update enricher binary script.
Update the enricher parameters, especially those related with the background distribution.
Update scripts accordingly to change in the header of the enricher output - the header does not start with a "#" anymore, and there is an extra line in the header.
An integral update surrounding the GO enrichment step of MINI-AC is necessary, which includes: