I noticed that when I mistakenly supply either (1) a file with the wrong number of columns, or (2) a gzipped file that was supposed to be unzipped (such as the miniexExample_allMarkers.tsv file), the "check_user_input" stage does not flag this. Instead, an error gets thrown when these files are parsed later in the script.
Would it be possible to add checks for these two cases to the user input verification stage?
Dear Developers
I noticed that when I mistakenly supply either (1) a file with the wrong number of columns, or (2) a gzipped file that was supposed to be unzipped (such as the miniexExample_allMarkers.tsv file), the "check_user_input" stage does not flag this. Instead, an error gets thrown when these files are parsed later in the script.
Would it be possible to add checks for these two cases to the user input verification stage?
Thank you!