ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-ortholog Ks distributions.
ksrates workflow for paralog Ks was interrupted if the following warning was raised by i-ADHoRe:
ERROR i-ADHoRe execution failed with standard error output:
Warning: Dubious indirect gene relationship between GENE1 and GENE2, closest genes get same color in alignment
ERROR Exiting.
This happened because the warning is handled as an error by i-ADHoRe (see issue #45 for more details) and consequently by ksrates too.
This merge request prints the warnings without interrupting the flow.
ksrates workflow for paralog Ks was interrupted if the following warning was raised by i-ADHoRe:
This happened because the warning is handled as an error by i-ADHoRe (see issue #45 for more details) and consequently by ksrates too.
This merge request prints the warnings without interrupting the flow.