ortholog_peak_db.tsv, ortholog_ks_list_db.tsv database are not generated

[B10inform]

Hi, This tool looks great for wgd analysis. I am having issues running it. The ortholog_peak_db.tsv, ortholog_ks_list_db.tsv are not generated automatically with the nextflow pipeline. Do i need to generate using manual ksrates pipeline?

Thanks,

[Cecilia-Sensalari]

Hi,

Thanks for reaching out! Normally the database files are automatically generated both by the manual pipeline and the Nextflow pipeline. Their file path (or file name) is defined in your ksrates configuration file; it will generate them with default names ortholog_peak_db.tsv and ortholog_ks_list_db.tsv in the launching directory, unless you specify differently.

Could you therefore double-check your launching directory? To be more in control, you could set for the databases an absolute path in the configuration file:

peak_database_path = /my/absolute/path/to/ortholog_peak_db.tsv
ks_list_database_path = /my/absolute/path/to/ortholog_ks_list_db.tsv

Let me know if this helps, and otherwise we look for another reason!

Best, Cecilia

[Cecilia-Sensalari]

Hi,

I'll close this issue for inactivity, but feel free to post further if needed, and I'll reopen it :)

Best, Cecilia