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VU-Cog-Sci / nideconv

fit response shapes from signal time-courses
MIT License
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Allow get_fmriprep_timeseries on invalid BIDS data #30

Open vitruvi opened 2 years ago

vitruvi commented 2 years ago

I could only run fmriprep with skipping bids validation. I want to extract TS on ROI. I get the error below.

Should invalid_filters="allow" flag be modifiable via the get_fmriprep_timeseries function arguments as a workaround for this?

/miniconda3/envs/nideconv/lib/python3.9/site-packages/bids/layout/layout.py", line 619, in get raise ValueError(msg + "If you're sure you want to impose " ValueError: 'extensions' is not a recognized entity. Did you mean ['extension']? If you're sure you want to impose this constraint, set invalid_filters='allow'.

alexsayal commented 1 year ago

Hello!

I am getting the same error on a validated BIDS dataset. Did you have any luck?

Thanks,