VU-Cog-Sci / nideconv

fit response shapes from signal time-courses
MIT License
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Installation error due to deprecated sklearn #35

Open jvschw opened 6 months ago

jvschw commented 6 months ago

Dear developers (hi Tomas) my installation on a Mac M3 Python 3.9.19 (main, Mar 21 2024, 12:07:41) [Clang 14.0.6 ] :: Anaconda, Inc. on darwin

conda create --name nideconv conda activate nideconv conda install numpy scikit-learn pystan pip install git+https://github.com/VU-Cog-Sci/nideconv

fails with the following messages:

pip install git+https://github.com/VU-Cog-Sci/nideconv Collecting git+https://github.com/VU-Cog-Sci/nideconv Cloning https://github.com/VU-Cog-Sci/nideconv to /private/var/folders/k8/w6f23_rx489b8ttd_trmscwc0000gn/T/pip-req-build-99el_gp1 Running command git clone --filter=blob:none --quiet https://github.com/VU-Cog-Sci/nideconv /private/var/folders/k8/w6f23_rx489b8ttd_trmscwc0000gn/T/pip-req-build-99el_gp1 Resolved https://github.com/VU-Cog-Sci/nideconv to commit bdee405c671329c79bf200d26f087aea62557106 Preparing metadata (setup.py) ... done Requirement already satisfied: cython in ./anaconda3/envs/nideconv/lib/python3.9/site-packages (from nideconv==0.1rc6) (3.0.10) Requirement already satisfied: numpy in ./anaconda3/envs/nideconv/lib/python3.9/site-packages (from nideconv==0.1rc6) (1.26.4) Requirement already satisfied: scipy in ./anaconda3/envs/nideconv/lib/python3.9/site-packages (from nideconv==0.1rc6) (1.12.0) Collecting sklearn (from nideconv==0.1rc6) Downloading sklearn-0.0.post12.tar.gz (2.6 kB) Preparing metadata (setup.py) ... error error: subprocess-exited-with-error

× python setup.py egg_info did not run successfully. │ exit code: 1 ╰─> [15 lines of output] The 'sklearn' PyPI package is deprecated, use 'scikit-learn' rather than 'sklearn' for pip commands.

  Here is how to fix this error in the main use cases:
  - use 'pip install scikit-learn' rather than 'pip install sklearn'
  - replace 'sklearn' by 'scikit-learn' in your pip requirements files
    (requirements.txt, setup.py, setup.cfg, Pipfile, etc ...)
  - if the 'sklearn' package is used by one of your dependencies,
    it would be great if you take some time to track which package uses
    'sklearn' instead of 'scikit-learn' and report it to their issue tracker
  - as a last resort, set the environment variable
    SKLEARN_ALLOW_DEPRECATED_SKLEARN_PACKAGE_INSTALL=True to avoid this error

  More information is available at
  https://github.com/scikit-learn/sklearn-pypi-package
  [end of output]

note: This error originates from a subprocess, and is likely not a problem with pip. error: metadata-generation-failed

× Encountered error while generating package metadata. ╰─> See above for output.

note: This is an issue with the package mentioned above, not pip. hint: See above for details.

I also tried with setting the environment variable SKLEARN_ALLOW_DEPRECATED_SKLEARN_PACKAGE_INSTALL=True

but got the same results.

Can you help?

Best, Jens