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VUmcCGP / wisecondor

WISECONDOR (WIthin-SamplE COpy Number aberration DetectOR): Detect fetal trisomies and smaller CNV's in a maternal plasma sample using whole-genome data.
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HMTL Viewer for the latest ver of WISECONDOR #45

Open chantisakee opened 5 years ago

chantisakee commented 5 years ago

Hi, I would like to know that is that possible for HMTL Viewer using this latest version of WISECONDOR?

I've tried using makejson.py from legacy version using _out.npz as an input. Btw, I've got an error.

Traceback (most recent call last): File "makejson.py", line 6, in sampleData = pickle.load(open(sys.argv[1],'rb')) File "/colossus/home/chantisa/miniconda2/envs/Wisecondor/lib/python2.7/pickle.py", line 1384, in load return Unpickler(file).load() File "/colossus/home/chantisa/miniconda2/envs/Wisecondor/lib/python2.7/pickle.py", line 864, in load dispatchkey File "/colossus/home/chantisa/miniconda2/envs/Wisecondor/lib/python2.7/pickle.py", line 897, in load_persid self.append(self.persistent_load(pid)) AttributeError: Unpickler instance has no attribute 'persistent_load'

is that possible to solve?

Thanks, Chantisa

Ps. are there anyway to know the reference bin set from our reference dataset??