gmx_MMPBSA_ana crashes just after loading the data for analysis. I have tried multiple times, but each time the same error occurs for the same system. However, this error doesn't occur for any other system. Could you please help me understand why is this system not been read by the gmx_MMPBSA_ana package
Terminal output
multiprocessing.pool.RemoteTraceback:
"""
Traceback (most recent call last):
File "/home/nfb/miniconda3/envs/gmxMMPBSA/lib/python3.10/multiprocessing/pool.py", line 125, in worker
result = (True, func(*args, **kwds))
File "/home/nfb/miniconda3/envs/gmxMMPBSA/lib/python3.10/site-packages/GMXMMPBSA/analyzer/dialogs.py", line 605, in run_process
obj = obj_method(**v['args']) if v['args'] else obj_method()
File "/home/nfb/miniconda3/envs/gmxMMPBSA/lib/python3.10/site-packages/GMXMMPBSA/API.py", line 850, in get_ana_data
dict(data=decomp[level][level1][level2][level3], level=item_lvl,
File "/home/nfb/miniconda3/envs/gmxMMPBSA/lib/python3.10/site-packages/pandas/core/frame.py", line 4102, in __getitem__
indexer = self.columns.get_loc(key)
File "/home/nfb/miniconda3/envs/gmxMMPBSA/lib/python3.10/site-packages/pandas/core/indexes/range.py", line 417, in get_loc
raise KeyError(key)
KeyError: 'delta'
"""
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "/home/nfb/miniconda3/envs/gmxMMPBSA/lib/python3.10/site-packages/GMXMMPBSA/analyzer/dialogs.py", line 618, in run
for result in imap_unordered_it:
File "/home/nfb/miniconda3/envs/gmxMMPBSA/lib/python3.10/multiprocessing/pool.py", line 873, in next
raise value
KeyError: 'delta'
Aborted (core dumped)
Actual outcome
Gmx_MMPBSA_ana crashes immediately after reading the files by clicking on the Accept button
Expected outcome
To be able to open the analysis and navigate through the plots from the trajectories
Additional information
Methods such as gb and decomp were used. One noticeable condition I noticed is a exceptionally low binding energy about -0.37 kcal/mol.
Bug summary
gmx_MMPBSA_ana crashes just after loading the data for analysis. I have tried multiple times, but each time the same error occurs for the same system. However, this error doesn't occur for any other system. Could you please help me understand why is this system not been read by the gmx_MMPBSA_ana package
Terminal output
Actual outcome
Gmx_MMPBSA_ana crashes immediately after reading the files by clicking on the Accept button
Expected outcome
To be able to open the analysis and navigate through the plots from the trajectories
Additional information
Methods such as gb and decomp were used. One noticeable condition I noticed is a exceptionally low binding energy about -0.37 kcal/mol.
Operating system
Ubuntu 22 LTS
gmx_MMPBSA_ana Version
gmx_MMPBSA_ana v1.6.3
Python version
3.10
Installation
AmberTools compilation + conda