VallejosGroup BASiCSWorkflow issues

VallejosGroup / BASiCSWorkflow

0 stars 1 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

comment about contamination in the text? (could be when interpreting HVGs or diff var)

#50 catavallejos closed 9 months ago
1
proc.time() in MCMC-run chunk?

#49 catavallejos closed 1 year ago
2
Docker warning

#48 catavallejos opened 1 year ago
10
To-do

#47 catavallejos closed 9 months ago
0
Revise code and add further comments throughout

#46 catavallejos closed 1 year ago
0
Create a cartoon/diagram to illustrate the BASiCS model(s)

#45 catavallejos closed 1 year ago
4
Pre-submission edits

#44 alanocallaghan closed 9 months ago
0
Major comments

#43 alanocallaghan closed 1 year ago
1
Minor comments from all reviews

#42 alanocallaghan closed 1 year ago
4
F1000Research to-do list

#41 catavallejos closed 2 years ago
0
Build issue on Mac

#40 nilseling closed 3 years ago
4
submission checklist

#39 alanocallaghan closed 3 years ago
1
Publish repo

#38 alanocallaghan closed 3 years ago
0
Grant information

#37 alanocallaghan closed 3 years ago
0
Final edits - to-do

#36 catavallejos closed 3 years ago
1
Final (?) to-do list

#35 catavallejos closed 4 years ago
5
Fix caption and size for Fig 7.

#34 catavallejos closed 4 years ago
1
Add EB prior to main description of BASiCS usage

#33 catavallejos closed 4 years ago
0
Changes for current draft (compiled on June 5)

#32 catavallejos closed 4 years ago
3
Final (minor) changes to Figure 1

#31 catavallejos closed 4 years ago
2
Passive voice -> active voice

#30 alanocallaghan closed 4 years ago
0
Variability section needs to be linked to others

#29 alanocallaghan closed 4 years ago
4
Remove ess histograms?

#28 alanocallaghan closed 4 years ago
1
Use readRDS or BASiCS_LoadChain?

#27 catavallejos closed 4 years ago
3
Full pdf does not compile

#26 catavallejos closed 4 years ago
15
Re-run chains using current filter

#25 catavallejos closed 4 years ago
9
Rename .Rds files

#24 catavallejos closed 4 years ago
0
Group MCMC and convergence for naive and active cells

#23 catavallejos closed 4 years ago
1
Fix gene-level QC

#22 catavallejos closed 4 years ago
12
Consistent use of download_file or download.file

#21 catavallejos closed 4 years ago
1
Gene filtering needs to be applied to spike-ins

#20 catavallejos closed 4 years ago
2
Changes after initial draft

#19 catavallejos closed 4 years ago
7
Move some diagnostics to supplementary?

#18 alanocallaghan closed 4 years ago
1
Diagnostics for PSM/SM chains

#17 alanocallaghan closed 4 years ago
1
Caption and size figures consistently

#16 alanocallaghan closed 4 years ago
2
Summarising main changes / discussion points

#15 catavallejos closed 4 years ago
14
ComplexHeatmap does not install

#14 catavallejos closed 4 years ago
5
edit overview figure

#13 catavallejos closed 4 years ago
16
Upload docker image to docker hub

#12 catavallejos closed 4 years ago
18
Review intro+methods

#11 alanocallaghan closed 4 years ago
2
Code for plots on same page as plot

#10 alanocallaghan closed 4 years ago
0
Finish C1 naive/active

#9 alanocallaghan closed 4 years ago
1
Replace ENS with gene symbols in plots

#8 alanocallaghan closed 4 years ago
0
PSM/SM GO interpretation

#7 alanocallaghan closed 4 years ago
0
PSM/SM GO (variability)

#6 alanocallaghan closed 4 years ago
0
Format sessioninfo

#5 alanocallaghan closed 4 years ago
1
Overview figure is missing

#4 alanocallaghan closed 4 years ago
0
FInal reproducibility steps

#3 alanocallaghan closed 3 years ago
1
Missing references

#2 catavallejos closed 4 years ago
15
Update Nils' affiliation

#1 catavallejos closed 4 years ago
0