Bulk HDI filed out of order in WGBS version - Githubissues

VanLoo-lab / CAMDAC

GNU General Public License v3.0

11 stars 5 forks source link

Bulk HDI filed out of order in WGBS version #11

Open Lesky47 opened 1 month ago

Lesky47 commented 1 month ago

https://github.com/VanLoo-lab/CAMDAC/blob/13113f8a473c0c9170922693d2f5c08510e238e4/R/asm_cmain.R#L397C15-L397C20 data.table::merge has sort=TRUE by default and the returned HDI object doesn't match the original methylation counts.