JAMP won't work with up to date cutadapt

VascoElbrecht / JAMP

JAMP - Just Another Metabarcoding Pipeline

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JAMP won't work with up to date cutadapt #22

Closed DominikBuchner closed 3 years ago

DominikBuchner commented 3 years ago

Hi Vasco, JAMP does not seem to work with the latest version of cutadapt. After downgrading to 2.5 everything works as usual. Maybe fix this for performance?

VascoElbrecht commented 3 years ago

Thank you for letting me know. I will fix this the next days =)

dleopold commented 3 years ago

I believe the problem is that the input file type to cutadapt is always auto detected and the -f flag is no longer accepted. The -f flag has been ignored by cutadapt since v2.0. But, including it for the most recent version causes it to fail.

VascoElbrecht commented 3 years ago

fixed now, sorry for taking so long with it ^^ lots of other things going on