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VascoElbrecht
/
PrimerMiner
R mased batch sequence downloader, with primer development and in silico evaluation capabilities
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Error in list[[k]][start:end, 2:5] : subscript out of bounds
#44
z-pyyyy
opened
3 weeks ago
0
Error in rawToChar(res$content) : long vectors not supported yet: raw.c:68
#43
YechengWu1123
opened
7 months ago
0
Error in read.fasta(readin[k], as.string = T) : no line starting with a > character found
#42
YechengWu1123
opened
8 months ago
2
PrimerMiner
#41
Saleh-Aljaafari
opened
2 years ago
1
not available for this version of R
#40
babinecha
opened
2 years ago
6
plot_alignment step restrictions
#39
ucbtmae
opened
3 years ago
1
Can't make plots from lower case fasta files
#38
VascoElbrecht
opened
3 years ago
0
Design Primers
#37
marcomeola
closed
3 years ago
1
update error matching
#36
VascoElbrecht
opened
3 years ago
0
Any option to get the species in each cluster?
#35
hernanmd
closed
4 years ago
2
Some errors when trying to batch download with 12S and 16S markers
#34
ucbtmae
opened
5 years ago
2
Error installing JAMP locally
#33
LarrainK
opened
5 years ago
1
NCBI download does currently not work
#32
VascoElbrecht
closed
6 years ago
2
check how gaps are handled with ribosomal alignments
#31
VascoElbrecht
opened
6 years ago
0
Add maximum sequence number to download!
#30
VascoElbrecht
opened
6 years ago
0
0.3 bases
#29
VascoElbrecht
opened
6 years ago
0
include product annotation in mitogenome extractions!
#28
VascoElbrecht
closed
6 years ago
1
Include scoring table into primer miner it self!
#27
VascoElbrecht
closed
7 years ago
1
Install issue
#26
Sebastian-Mynott
closed
7 years ago
5
If no sequences are obtained, a ReadLines error occurs
#25
VascoElbrecht
closed
6 years ago
1
add function to selectively trimm alignments
#24
VascoElbrecht
closed
7 years ago
1
auto delete folders when downloading failed because of server error
#23
VascoElbrecht
opened
8 years ago
1
Compare each sequence against a mitochondrial reference before clustering and verify that primers are trimmed with BOLD api
#22
VascoElbrecht
opened
8 years ago
0
add an option to include custom data into the clustering process
#21
VascoElbrecht
opened
8 years ago
1
Check version in config file against installed PrimerMiner file
#20
VascoElbrecht
opened
8 years ago
0
Add dependencies to package so they are automatically installed
#19
VascoElbrecht
opened
8 years ago
1
Use "stop(), warning() or message()" instead of "print()"
#18
VascoElbrecht
closed
8 years ago
1
BOLD database - support plant / fungi markers
#17
VascoElbrecht
opened
8 years ago
0
primer_evaluation
#16
VascoElbrecht
closed
6 years ago
1
automatcally cluster mitogenomes as well, to provide a backbone to map agains
#15
VascoElbrecht
opened
8 years ago
0
hotfix
#14
VascoElbrecht
closed
8 years ago
0
batch download - unknown error
#13
VascoElbrecht
opened
8 years ago
4
Make empty taxonomy file when generating the batch file
#12
VascoElbrecht
closed
8 years ago
1
add option for custom folder names (taxonomy independent)
#11
VascoElbrecht
closed
8 years ago
0
Batch download will fail if no sub categories are defined
#10
VascoElbrecht
closed
8 years ago
1
Write PrimerMiner version in config file
#9
VascoElbrecht
closed
8 years ago
1
Prevent Vsearch from writing lower characters
#8
VascoElbrecht
opened
8 years ago
0
3
#7
VascoElbrecht
closed
8 years ago
0
v3
#6
VascoElbrecht
closed
8 years ago
0
v0.3
#5
VascoElbrecht
closed
8 years ago
0
speed up writing OTU consensus sequences in the batch_download comand
#4
VascoElbrecht
opened
8 years ago
1
plot_alignments crashes when only plotting one fasta file
#3
VascoElbrecht
opened
8 years ago
1
use --msaout to write majority consensus OTU sequences
#2
VascoElbrecht
closed
8 years ago
1
download_stats pruoduces an error when files in the same folder are downloaded several times.
#1
VascoElbrecht
opened
8 years ago
0