Closed Bjoernsen closed 7 years ago
Hi,
the back-end analysis did not work for me, because limma was not installed. But this problem was not fixed, after installing limma (and edgeR).
limma
edgeR
I was able to fix this issue by changing the R library path hard coded in app/backend/r-json.hs
app/backend/r-json.hs
Original line 262:
(_,out,err,pid) <- runInteractiveProcess "Rscript" ["--vanilla",inF] Nothing (Just [("R_LIBS_SITE","/bio/sw/R:")])
New line 262:
(_,out,err,pid) <- runInteractiveProcess "Rscript" ["--vanilla",inF] Nothing (Just [("R_LIBS_SITE","/path/to/my/R/library:")])
I'd forgotten that. I guess the best solution is to have r-json read a config file of some sort at startup
Not a problem on the new site : degust.erc.monash.edu
Hi,
the back-end analysis did not work for me, because
limma
was not installed. But this problem was not fixed, after installinglimma
(andedgeR
).I was able to fix this issue by changing the R library path hard coded in
app/backend/r-json.hs
Original line 262:
New line 262: