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Victorian-Bioinformatics-Consortium / degust

Deprecated : Use https://github.com/drpowell/degust
GNU General Public License v3.0
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Use KEGG GMT files from MolSigDB to automatically match gene/KEGG pathway relationships #18

Open AMChalkie opened 10 years ago

AMChalkie commented 10 years ago

Hi,

I'm using GMT files from MolSigDB for a bunch of things, and think that an auto-assignment of Gene to KEGG pathway would be useful, rather than requiring EC number in the counts file. This would also open up the option to use other gene set databases.

/Alistair

drpowell commented 10 years ago

Agreed, I'm using msigdb a fair bit too. I'm hoping to add a feature to filter by gene sets like this in the next couple of months.