configure file missing or RNAz not getting installed.

[DollyCM]

No configure file in github location. When downloaded from the main website (it does have a configure file) but the program does not get installed with the following error:

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g++ -o RNAz RNAz.o rnaz_utils.o svm_helper.o zscore.o cmdline.o strand.o svm.o -L../librna -lRNA -lm /usr/bin/ld: ../librna/libRNA.a(fold.o): in function stack_energy': /RNAz-2.1/librna/fold.c:1048: undefined reference toLoopEnergy' /usr/bin/ld: ../librna/libRNA.a(fold.o): in function backtrack': /RNAz-2.1/librna/fold.c:672: undefined reference toLoopEnergy' /usr/bin/ld: ../librna/libRNA.a(fold.o): in function fill_arrays': /RNAz-2.1/librna/fold.c:284: undefined reference toLoopEnergy' /usr/bin/ld: ../librna/libRNA.a(alifold.o): in function alifold': /RNAz-2.1/librna/alifold.c:186: undefined reference toHairpinE' /usr/bin/ld: /RNAz-2.1/librna/alifold.c:203: undefined reference to LoopEnergy' /usr/bin/ld: /RNAz-2.1/librna/alifold.c:465: undefined reference toHairpinE' /usr/bin/ld: /RNAz-2.1/librna/alifold.c:479: undefined reference to `LoopEnergy'

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Please kindly help fix this issue as I really need this software for my analyses.

[svenderheld]

Dear DollyCM,

you need first to run

./autogen.sh

in the downloaded/cloned RNAz directory. It will generate the configure file.

Hope that helps?!

Best, Sven