ViennaRNA / ernwin

Sample and predict coarse grain 3D RNA structures
GNU Affero General Public License v3.0
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ShortestLoopDistancePerLoop: Energies with background can have unexpectedly high value #2

Closed Bernhard10 closed 1 month ago

Bernhard10 commented 8 years ago

If a sampled vloop distance is far from everything ever encountered during sampling before, ks is near zero (e.g. 2*10^-230) and the energy value can become unexpectedly high.

In the next step, it will drop dramatically again, because ks now does not have such a high influence.

The kernel density estimations from the initial 100 values loaded into the file seems to be rather sharp around certain values.

Bernhard10 commented 8 years ago

Probably solved in develop