Closed Bernhard10 closed 5 years ago
Pseudoknots are identified by the connection_type, e.g. in is_node_pseudoknot. A connection type of 5 means pseudoknot.
connection_type
is_node_pseudoknot
However, every pseudoknot typically contains one multiloop segment of connection type 5, while the remaining segments are of type 2,3 or 4.
I don't think we can pinpoint the pseudoknot to this specific multiloop segment.
This might also influence the stats for not-pseudoknot loops of type 2-4
This should be fixed in forgi 2.0
Pseudoknots are identified by the
connection_type
, e.g. inis_node_pseudoknot
. A connection type of 5 means pseudoknot.However, every pseudoknot typically contains one multiloop segment of connection type 5, while the remaining segments are of type 2,3 or 4.
I don't think we can pinpoint the pseudoknot to this specific multiloop segment.
This might also influence the stats for not-pseudoknot loops of type 2-4