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ViennaRNA / forgi

An RNA manipulation library.
GNU General Public License v3.0
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Is hausdorff projection necessary for basic energy evaluation? #17

Closed pkerpedjiev closed 7 years ago

pkerpedjiev commented 8 years ago

Is the Hausdorff projection necessary for basic sampling or should it only be required when trying to create 2D projections?

[pkerp@fluidspace ernwin] [master]$ ernwin_go.py --output-dir ~/papers/prospective/FRETtranslator/ernwin-data/ --log-to-file -i 50000 ~/data/cgs/3FU2.cg
/scr/fluidspace/pkerp/local/lib/python2.7/site-packages/forgi/threedee/utilities/average_stem_vres_atom_positions.py:2: UserWarning: Module average_stem_vres_atom_positions.py is depricated and buggy.
  warnings.warn("Module average_stem_vres_atom_positions.py is depricated and buggy.")
Traceback (most recent call last):
  File "/home/mescalin/pkerp/.virtualenvs/stuff/bin/ernwin_go.py", line 18, in <module>
    import fess.builder.energy as fbe
  File "/home/mescalin/pkerp/projects/ernwin/fess/builder/energy.py", line 29, in <module>
    import forgi.projection.hausdorff as fph
ImportError: No module named projection.hausdorff
Bernhard10 commented 8 years ago

It is definitely not required for basic sampling. But it is part of newer forgi versions anyway, so there should be no harm done when importing it at the top level of the module. Your traceback suggests that you use an older forgi version with a newer ernwin version.