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ViennaRNA / forgi

An RNA manipulation library.
GNU General Public License v3.0
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Secondary structure with MC-annotate #41

Open mandar5335 opened 2 years ago

mandar5335 commented 2 years ago

Hi,

I used rnaConvert.py to get secondary structure with 

rnaConvert.py -T fasta 5nwq_A.pdb --pdb-annotation-tool MC-Annotate

The predicted SS is without pseudoknot base pairing, is it expected behavior for pseudoknot structures?

>5nwq_A
CCGGACGAGGUGCGCCGUACCCGGUCAGGACAAGACGGCGC
...........(((((((................)))))))

Best, Mandar Kulkarni