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Vikasdubey0551 / svd_angle_between_vectors

'Fits' a vector/vectors to the helix/helicies using Singular Value Decomposition (SVD) and measures angle between them in a trajectory.
GNU General Public License v3.0
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Help me out? #1

Open sec000 opened 4 years ago

sec000 commented 4 years ago

Hey, I am a computer science student and have to do an assignment related to biology and SVD can you please give me a little background about this project, and can you please upload the data file so that i can rut it.

Thanks in advance :)

Vikasdubey0551 commented 4 years ago

Hi Yash,

Thanks for interest in my work. I would recommend choosing my other works based on drug activity classification. It has more documentation and would be easy to follow. Here is the link:

https://github.com/Vikasdubey0551/ML-drug-effectiveness-abl-kinase

Remember to star it if it helps you. Let me know if you have any questions.

Thanks,

On Tue, 20 Oct 2020, 18:58 Yash Anand, notifications@github.com wrote:

Hey, I am a computer science student and have to do an assignment related to biology and SVD can you please give me a little background about this project, and can you please upload the data file so that i can rut it.

Thanks in advance :)

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/Vikasdubey0551/svd_angle_between_vectors/issues/1, or unsubscribe https://github.com/notifications/unsubscribe-auth/AJYBBANFTSCN5B5GWRLXZADSLW6U3ANCNFSM4SYT3WEQ .

sec000 commented 4 years ago

My assignment is based on SVD, so it will be very helpful to provide some test data to run the code

Vikasdubey0551 commented 4 years ago

Hi, The project you have chosen is a bit specific. It fits a vector to an alpha helix of a the protein using SVD. By fitting a vector you can calculate how that helix is changing overtime in a dataset. Github does allow large data files but you can a lot of protein simulations data online. Look for xtc files and pdb files.

On Tue, 20 Oct 2020, 18:58 Yash Anand, notifications@github.com wrote:

Hey, I am a computer science student and have to do an assignment related to biology and SVD can you please give me a little background about this project, and can you please upload the data file so that i can rut it.

Thanks in advance :)

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/Vikasdubey0551/svd_angle_between_vectors/issues/1, or unsubscribe https://github.com/notifications/unsubscribe-auth/AJYBBANFTSCN5B5GWRLXZADSLW6U3ANCNFSM4SYT3WEQ .

Vikasdubey0551 commented 4 years ago

Okay. I will share some of data but that will be possible tomorrow. It is lying around in my pc.

On Tue, 20 Oct 2020, 21:41 Vikas Dubey, vikas.iiserp@gmail.com wrote:

Hi, The project you have chosen is a bit specific. It fits a vector to an alpha helix of a the protein using SVD. By fitting a vector you can calculate how that helix is changing overtime in a dataset. Github does allow large data files but you can a lot of protein simulations data online. Look for xtc files and pdb files.

On Tue, 20 Oct 2020, 18:58 Yash Anand, notifications@github.com wrote:

Hey, I am a computer science student and have to do an assignment related to biology and SVD can you please give me a little background about this project, and can you please upload the data file so that i can rut it.

Thanks in advance :)

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/Vikasdubey0551/svd_angle_between_vectors/issues/1, or unsubscribe https://github.com/notifications/unsubscribe-auth/AJYBBANFTSCN5B5GWRLXZADSLW6U3ANCNFSM4SYT3WEQ .

sec000 commented 4 years ago

Ok thank you so much

sec000 commented 4 years ago

Any update ??

Vikasdubey0551 commented 4 years ago

Can you send me your personal email? I sent the files but message couldn't be delivered.

On Wed, 21 Oct 2020, 18:52 Yash Anand, notifications@github.com wrote:

Any update ??

— You are receiving this because you commented. Reply to this email directly, view it on GitHub https://github.com/Vikasdubey0551/svd_angle_between_vectors/issues/1#issuecomment-713713681, or unsubscribe https://github.com/notifications/unsubscribe-auth/AJYBBAIF7OMXGWNECGAM6TLSL4GVRANCNFSM4SYT3WEQ .

sec000 commented 4 years ago

yashanand155@gmail.com