Afte independent tests by another lab member, a couple issues were found:
Using lowercase to specify the modified amino acids results in a seg fault
The documentation states that neutral losses are specified with , but they are actually specified with ;. The former is better since the latter doesn't work well with unix.
Afte independent tests by another lab member, a couple issues were found:
,but they are actually specified with;. The former is better since the latter doesn't work well with unix.