This PR is to address issues #9 and #12, which are about differences in the documentation vs the code.
The first fixed issue is just to add tqdm as a requirement for the package, as the main code will not run without it.
The second issues are annoying discrepancies between the documentation and what happens in the main script. I fixed the delineation of neutral loss groups, and forced upper case input for the main modified residues. Lower case is still allowed for specifying neutral loss groups.
This PR is to address issues #9 and #12, which are about differences in the documentation vs the code.
The first fixed issue is just to add
tqdmas a requirement for the package, as the main code will not run without it.The second issues are annoying discrepancies between the documentation and what happens in the main script. I fixed the delineation of neutral loss groups, and forced upper case input for the main modified residues. Lower case is still allowed for specifying neutral loss groups.