[Feature request] fastg to gfa converter

Vini2 / phables

🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes

https://phables.readthedocs.io/

MIT License

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[Feature request] fastg to gfa converter #12

Open Vini2 opened 1 year ago

Vini2 commented 1 year ago

Is your feature request related to a problem? Please describe. Currently, phables takes assembly graph files only in gfa format.

Describe the solution you'd like Add a converting step if fastg files are provided to convert to gfa format.

pdec commented 3 months ago

The fastg2gfa referred in the docs for converting MegaHIT's assembly graph is a bit confusing and points to a deprecated repo. I tried the gfatools and it seems to properly convert the .fastg into .gfa with gfatools view graph.fastg > graph.gfa