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Vini2 / phables

🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes
https://phables.readthedocs.io/
MIT License
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phables test failed ! #24

Closed minhtrung1997 closed 12 months ago

minhtrung1997 commented 1 year ago

Describe the bug I have used micromamba to install phables, as I've finished my install, phables install work well, but phables test produces error message: phables_log_error.txt

minhtrung1997 commented 1 year ago

To fix the error, I have to install separately from the yaml file, following the command:

micromamba env create --quiet --file "/home/ktest/pipeline_env/software/environment/Trung_conda/phables-1.0.0/lib/python3.10/site-packages/phables/workflow/conda/4a5c5ed5b2e2312983716ca2e8acf6f5_.yaml" --prefix "/home/ktest/pipeline_env/software/environment/Trung_conda/phables-1.0.0/lib/python3.10/site-packages/phables/workflow/conda/4a5c5ed5b2e2312983716ca2e8acf6f5_"

And run the phables test smoothly !!!

Vini2 commented 12 months ago

Hi @minhtrung1997,

Thanks for posting this issue. It looks like the latest release of mamba has some breaking changes. I will pin the mamba version and add a new release soon.

Thanks!

Vini2 commented 12 months ago

Pinning mamba<1.4.2.

Vini2 commented 12 months ago

Hello! I've added a new version of Phables to bioconda. I've pinned the version of mamba and now it should work fine.