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Vini2 / phables

🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes
https://phables.readthedocs.io/
MIT License
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[BUG] curl failed to verify the legitimacy of the server #43

Closed pdec closed 3 months ago

pdec commented 3 months ago

Hey,

during the fresh install of Phables it can not fetch PHROGs databases due to the SSL certificate problem of the site.

  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
curl: (60) SSL certificate problem: certificate has expired
More details here: https://curl.se/docs/sslcerts.html

curl failed to verify the legitimacy of the server and therefore could not
establish a secure connection to it. To learn more about this situation and
how to fix it, please visit the web page mentioned above.

This might be solved by using --insecure in lines 43 and 69 when calling the curl in the install.smk https://github.com/Vini2/phables/blob/f83086dccb2fe40f907b830daa33508549174f63/phables/workflow/install.smk#L43 https://github.com/Vini2/phables/blob/f83086dccb2fe40f907b830daa33508549174f63/phables/workflow/install.smk#L69

Vini2 commented 3 months ago

Hi @pdec,

Thanks for posting the issue! I'll fix the curl commands and make a new release.