merges preprocessing and run for phables. now the user only needs to run phables install and phables run. users can still opt to only run preprocessing steps etc with phables run preprocessing or print the available stages to run individually with phables run print_stages. bunch of other misc refactoring etc.
merges preprocessing and run for phables. now the user only needs to run
phables installandphables run. users can still opt to only run preprocessing steps etc withphables run preprocessingor print the available stages to run individually withphables run print_stages. bunch of other misc refactoring etc.