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VirtualBrainLab / Pinpoint

Multi-probe trajectory planning in an intuitive 3D environment
https://data.virtualbrainlab.org/Pinpoint/
GNU General Public License v3.0
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3D nuclei overlapping 2D atlas slice using Qui2018 atlas #748

Open kimiline opened 1 month ago

kimiline commented 1 month ago

Describe the bug On the web version of Pinpoint, using the Qui2018 atlas, in plane slice, and entering a target nucleus (which shows up in 3D), the 3D slice overlaps with the nucleus above it shown in the in plane slice.

To Reproduce Steps to reproduce the behavior:

  1. open web-based pinpoint, load Qui2018 atlas, select in plane slice.
  2. list target region (LP for example below), target with a probe
  3. rotate and zoom in to see that LP (in 3D) is overlapping with DG, note that 3D version of CP overlaps with 2D version of MOp too.

Screenshots Screenshot 2024-10-08 151505

Log After re-creating the bug in your build of Pinpoint, please find and attach the Player.log file. This has important debugging information that we need to fix issues.

On Windows the Player.log file is located at: %USERPROFILE%\AppData\LocalLow\VirtualBrainLab\Pinpoint\Player.log On Linux: ~/.config/unity3d/VirtualBrainLab/Pinpoint/Player.log In a browser the Player.log file is written to the console. Please copy and paste the entire contents of the console into your issue, or into a file attached to your issue. To access the console: 

In Firefox, press Ctrl-Shift-K on Windows or Command-Option-K on a Mac.
In Chrome, press Ctrl-Shift-J on Windows or Command-Option-J on a Mac.
In Safari, go to Preferences > Advanced > Develop, and press Command-Option-C.
In Microsoft Edge or Internet Explorer, press F12.

I am unable to locate the player.log file in chrome using the directions above, sorry!

dbirman commented 1 month ago

Hmm this is weird, I wonder if this is an issue with the order that the atlases load and warp the meshes. Anyways I'll take a look thanks for reporting!