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VirtualFlyBrain / StackLoader

Internal code to load aligned nrrd files into VFB
MIT License
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Unused alignments #2

Open Robbie1977 opened 9 years ago

Robbie1977 commented 9 years ago

@dosumis @mmc46 I have a few aligned images we don't seem to be using and I'm not sure why:

CacheroOstrovsky2010: pSP-f_F.nrrd psp-f_f pSP-e_F.nrrd psp-e_f pSP-d_F.nrrd psp-d_f aIP-i_F.nrrd aip-i_f

Ito2013: SLPav4_01.nrrd slpav4_01

mmc46 commented 9 years ago

The Cachero ones are cases in which the clones are not dimorphic, but the individual for the female clone is missing in Cachero2010.owl. Similar for Yu2013, Just missing the individual for the SLPav4 lineage clone, we've got the ontology term (adult SLPav4 lineage clone, FBbt:00110363).

I can add them if @dosumis can tell me what id ranges I should be using for these.

Robbie1977 commented 9 years ago

How many ids do you need? On Thu, 5 Mar 2015 at 11:29, mmc46 notifications@github.com wrote:

The Cachero ones are cases in which the clones are not dimorphic, but the individual for the female clone is missing in Cachero2010.owl. Similar for Yu2013, Just missing the individual for the SLPav4 lineage clone, we've got the ontology term (adult SLPav4 lineage clone, FBbt:00110363).

I can add them if @dosumis https://github.com/dosumis can tell me what id ranges I should be using for these.

— Reply to this email directly or view it on GitHub https://github.com/VirtualFlyBrain/StackLoader/issues/2#issuecomment-77348667 .

dosumis commented 9 years ago

You should add them using the Python mod. IDs are assigned automatically and returned by the assigning function.

dosumis commented 9 years ago

https://github.com/VirtualFlyBrain/VFB_owl/blob/master/src/code/mod/lmb_fc_tools.py

You can use the method add_ind on the class owlDbOnt. (Thinking about it - this would be better as an indpedent function).

Happy to add these myself now if you can just give me a list of names. Is the set above the complete?

Robbie1977 commented 6 years ago

Added to latest release 2018-09-20