VirtualFlyBrain / VFB

Virtual Fly Brain
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Show citation for PMID #957

Open mmc46 opened 8 years ago

mmc46 commented 8 years ago

For a paper with a FBrf, in most cases, we show the citation. It would be good if this was also the case for PMID ids. Currently this is the text:

References:

PubMed ref PMID:20832311

(link to PubMed page)

Only by clicking on the link can I see what paper this is. So it would be more useful to remove this extra step and provide the citation on the page.

This might be useful https://pypi.python.org/pypi/pubmed-lookup

http://www.ncbi.nlm.nih.gov/pmc/tools/developers/#pmc-repos

dosumis commented 8 years ago

This should be fixed in neo (:Class|Individual)-[:has_reference]-(:Pub). Links are currently missing for Individuals. (:Pub) nodes all have PMIDs (if they exist). I can make sure that any PMIDs in def/synonym dbxrefs on OWL entities are used to create links to (:Pub) nodes (currently only FBrfs are).

Robbie1977 commented 8 years ago

Haven't finished working on neo version of the term info page but the refs should be resolved on http://vfbdev.inf.ed.ac.uk

mmc46 commented 8 years ago

Term info is showing only the id.

On 20 Jul 2016, at 17:19, Rob Court notifications@github.com wrote:

Haven't finished working on neo version of the term info page but the refs should be resolved on http://vfbdev.inf.ed.ac.uk http://vfbdev.inf.ed.ac.uk/ — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/VirtualFlyBrain/VFB/issues/957#issuecomment-234001016, or mute the thread https://github.com/notifications/unsubscribe-auth/AByQ08YG3PQQ3esH_9QzBK3nVfrRoV2jks5qXkqagaJpZM4JO5M_.

mmc46 commented 8 years ago

These were the first 2 examples I checked:

Robbie1977 commented 7 years ago

Showing in the Def references just not in the bibliography as currently I only have the PMID id. I believe @dosumis is going to load the full details from Pubmed in future so this should then appear.

Robbie1977 commented 7 years ago

See https://github.com/VirtualFlyBrain/VFB_neo4j/issues/10