VirtualFlyBrain / VFB

Virtual Fly Brain
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Add cluster info to individuals FC term info #959

Open mmc46 opened 8 years ago

mmc46 commented 8 years ago

It would make it much easier to navigate VFB, and to use it coming from an external site like NBLAST if some more info on clusters was added to the term info section of FC individuals (that are part of a cluster).

This extra info could include:

dosumis commented 8 years ago

Agree this should be a high priority. Very straightforward to add these using neo4J:


MATCH (:Individual { short_form :'VFB_00009700' })-[:Related { label : 'member_of' }]->
(cluster:Individual)-[:Related { label : 'has_exemplar' }]-(exemplar:Individual)
RETURN cluster, exemplar

--- Clusters returned are named "Cluster v.n" where v = clustering version, n = cluster id. 

MATCH (:Individual { short_form :'VFB_00009700' })-[:Related { label : 'member_of' }]->
(cluster:Individual)-[:Related { label : 'member_of' }]-(member:Individual)
RETURN member

Note - clusters are not integrated into the image system yet. (They are not an easy fit). But I think it should be a priority to have cluster membership displayed using thumbnail. We should probably add cluster pages (pulling details from LMB site?), but in the short term, as you say, links should go out to LMB cluster pages.

Is X an exemplar

Robbie1977 commented 8 years ago

Exists already on Geppetto and on vfbdev version but don't currently have external source link to LMB. @dosumis I believe the external links should be added as a source ('NBLAST') with individual links to the source pages for each cluster.