Open dosumis opened 3 years ago
@admclachlan @mmc46 assigning to you to review/comment on suggestions before @Robbie1977 implements any changes.
Suggestions:
TermInfo:
Neuron-Region:
Neuron-Neuron:
Also for neuron-region:
Part of solving this may be to use the primary, non-overlapping rois but I'm not sure if those have full coverage.
For Term info
Show connected regions
Think "Show connectivity per region" would be better.
Show connected neurons
Is fine.
Neuron Region
Headers: Does 'outputs' and 'inputs' makes it sound like this is a count of neurons instead of individual synapses?
Inputs and outputs would be fine, these words are usually used to mean the synapses.
Images: always offset to the right of the header? makes the table look a bit messy. Might be better to centre all columns?
I think all columns are left aligned by default on the site, but making the images ones centred would definitely be better.
can we show images even if they are not from the same template? Would be better than having some blank results in the images column?
Not sure on this one. Same template would be better, if people want to display them in conjunction with the neurons. Not showing one makes it clear that there isn't one in that template, whereas showing another template would make it confusing. I guess the regions could be 'merged' together to generate others, 'MB(R)' for example, though I'm not sure how difficult that is.
using non-primary rois leads to overlap and potential confusion. For the example neuron above, the connectivity table gives three rows all with 3215 down and 128 up because the three overlapping regions shown are reporting the same connectivity. This makes it look like there is much more connectivity than there actually is.
Related to the above missing images. I think it's fine for now, better to be explicit than to try and work with the region hierarchy.
blocked regions: some regions are blocked from being displayed as they don't have images, but I still think it's useful to see the connectivity even if users can't see the regions.
Which ones are these? What's the difference between the ones without images that are shown and these?
Neuron-Neuron:
Type -> Partner_neuron_type:
Yes.
outputs/inputs: also think this is possibly ambiguous?
As mentioned in Neuron-Region, this is fine.
Partner neuron symbol
I'm not convinced this would add much to the table.
Partner_neuron_gross_type
This one would be useful, depending on space. It would be good to see how it might squash the remaining columns, and how that looks.
@Robbie1977 - Wondering about progress in changing query text?
We now have decent, working connectivity queries but should review and tweak.
Example:
https://v2.virtualflybrain.org/org.geppetto.frontend/geppetto?id=VFB_jrchjte4&i=VFB_00101567,VFB_jrchjte4
TermInfo:
Suggestions:
->
neuron-region query results
Suggested header changes
_Downstream_Synapses -> outputs (all)
_Tbars -> outputs (T-bars)
_Upstream_Synapses -> Inputs
(Note - at time of ticket writing, this upstream column is empty - but this should be fixed soon see #297)
Neuron-neuron queries
Looks pretty good now - but here's some poss changes
_Downstream_Synapses -> outputs
_Upstream_Synapses -> inputs
????