Closed Robbie1977 closed 1 month ago
T4a
Error parsing JSON element:
{"term":{"core":{"iri":"http://purl.obolibrary.org/obo/FBbt_00003732","symbol":"T4a","types":["Entity","Adult","Anatomy","Cell","Cholinergic","Class","Nervous_system","Neuron","Visual_system","has_subClass"],"short_form":"FBbt_00003732","unique_facets":["Adult","Cholinergic","Nervous_system","Visual_system"],"label":"T4a neuron"},"description":["T4 neuron with its lobula plate arbor in layer 1 (Fischbach and Dittrich, 1989). It responds to motion in a diagonal front-to-back direction (Henning et al., 2022)."],"comment":[]},"query":"Get JSON for Neuron Class","version":"e231b06","parents":[{"symbol":"T4","iri":"http://purl.obolibrary.org/obo/FBbt_00003731","types":["Entity","Adult","Anatomy","Cell","Cholinergic","Class","Nervous_system","Neuron","Visual_system","has_subClass"],"short_form":"FBbt_00003731","unique_facets":["Adult","Cholinergic","Nervous_system","Visual_system"],"label":"T4 neuron"}],"relationships":[{"relation":{"iri":"http://purl.obolibrary.org/obo/RO_0013003","database_cross_reference":[],"label":"sends synaptic output to region","type":"sends_synaptic_output_to_region","confidence_value":""},"object":{"symbol":"","iri":"http://purl.obolibrary.org/obo/FBbt_00003886","types":["Entity","Adult","Anatomy","Class","Nervous_system","Synaptic_neuropil","Synaptic_neuropil_subdomain","Visual_system"],"short_form":"FBbt_00003886","unique_facets":["Adult","Nervous_system","Synaptic_neuropil_subdomain","Visual_system"],"label":"lobula plate layer 1"}},{"relation":{"iri":"http://purl.obolibrary.org/obo/RO_0013001","database_cross_reference":[],"label":"has synaptic IO in region","type":"has_synaptic_IO_in_region","confidence_value":""},"object":{"symbol":"","iri":"http://purl.obolibrary.org/obo/FBbt_00003886","types":["Entity","Adult","Anatomy","Class","Nervous_system","Synaptic_neuropil","Synaptic_neuropil_subdomain","Visual_system"],"short_form":"FBbt_00003886","unique_facets":["Adult","Nervous_system","Synaptic_neuropil_subdomain","Visual_system"],"label":"lobula plate layer 1"}},{"relation":{"iri":"http://purl.obolibrary.org/obo/RO_0002202","database_cross_reference":[],"label":"develops from","type":"develops_from","confidence_value":""},"object":{"symbol":"","iri":"http://purl.obolibrary.org/obo/FBbt_00052263","types":["Entity","Anatomy","Cell","Class","Nervous_system","Neuron"],"short_form":"FBbt_00052263","unique_facets":["Nervous_system","Neuron"],"label":"immature T4a neuron"}}],"related_individuals":[],"xrefs":[{"link_base":"https://flybrain-ndb.virtualflybrain.org/neuronrec-","site":{"symbol":"","iri":"http://virtualflybrain.org/reports/FlyBrain_NDB","types":["Entity","Individual","Site"],"short_form":"FlyBrain_NDB","unique_facets":["Site"],"label":"FlyBrain NeuronDB"},"is_data_source":false,"link_postfix":[".html"],"icon":"http://flybrain-ndb.virtualflybrain.org/NDB_title260.gif","accession":"10118","link_text":"T4a neuron on FlyBrain NeuronDB","homepage":"https://flybrain-ndb.virtualflybrain.org"}],"anatomy_channel_image":[],"pub_syn":[{"synonym":{"scope":"has_exact_synonym","label":"T4a","type":"http://purl.obolibrary.org/obo/fbbt#VFB_SYMBOL"},"pub":{"core":{"symbol":"","iri":"http://flybase.org/reports/FBrf0247762","types":["Entity","Individual","pub"],"short_form":"FBrf0247762","unique_facets":["pub"],"label":"Özel et al., 2021, Nature 589(7840): 88--95"},"FlyBase":"FBrf0247762","PubMed":"33149298","DOI":"10.1038/s41586-020-2879-3"}},{"synonym":{"scope":"has_exact_synonym","label":"T neuron T4a","type":""},"pub":{"core":{"symbol":"","iri":"http://flybase.org/reports/Unattributed","types":["Entity","Individual","pub"],"short_form":"Unattributed","unique_facets":["pub"],"label":""},"FlyBase":"","PubMed":"","DOI":""}}],"def_pubs":[{"core":{"symbol":"","iri":"http://flybase.org/reports/FBrf0049410","types":["Entity","Individual","pub"],"short_form":"FBrf0049410","unique_facets":["pub"],"label":"Fischbach and Dittrich, 1989, Cell Tissue Res. 258(3): 441--475"},"FlyBase":"FBrf0049410","PubMed":"","DOI":"10.1007/BF00218858"},{"core":{"symbol":"","iri":"http://flybase.org/reports/FBrf0252436","types":["Entity","Individual","pub"],"short_form":"FBrf0252436","unique_facets":["pub"],"label":"Henning et al., 2022, Sci. Adv. 8(3): eabi7112"},"FlyBase":"FBrf0252436","PubMed":"35044821","DOI":"10.1126/sciadv.abi7112"}],"targeting_splits":[{"iri":"http://virtualflybrain.org/reports/VFBexp_FBtp0121686FBtp0118626","symbol":"","types":["Entity","Class","Expression_pattern","Split"],"short_form":"VFBexp_FBtp0121686FBtp0118626","unique_facets":["Expression_pattern","Split"],"label":"P{R39H12-GAL4.DBD} ∩ P{R35A10-p65.AD} expression pattern"},{"iri":"http://virtualflybrain.org/reports/VFBexp_FBtp0121686FBtp0118626","symbol":"","types":["Entity","Class","Expression_pattern","Split"],"short_form":"VFBexp_FBtp0121686FBtp0118626","unique_facets":["Expression_pattern","Split"],"label":"P{R39H12-GAL4.DBD} ∩ P{R35A10-p65.AD} expression pattern"}]}
| Error: java.lang.IllegalStateException: Expected STRING but was BEGIN_ARRAY
FBbt_00067054
This was an issue with xrefs having link_postfix in a list rather than the string extracted at the query level. Fix deployed
Please give details of the issue:
Issues decoding JSON - needs further investigation
found examples:
FBbt_00003743
Expected a string but was BEGIN_ARRAY at line 1 column 8675
FBbt_00003744
Expected a string but was BEGIN_ARRAY at line 1 column 9266
Support info: Thu Jul 11 2024 12:03:06 GMT+0100 (British Summer Time) Chrome 126.0.0.0 [1920,1113] https://v2.virtualflybrain.org/org.geppetto.frontend/geppetto?id=FBbt_00003743&i=VFB_00101567,VFB_001029e0