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VirtualFlyBrain / VFB_connectomics_import

A project to produce RDF/OWL representations of connectomics data for import to the VFB integration layer triple store.
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Look into Hemibrain v1.2 #9

Closed admclachlan closed 3 years ago

Clare72 commented 3 years ago

https://docs.google.com/document/d/1vae3ClHR8z8uekqwrOHtqiux3oY5-Y_xw6W2srCi3PI/edit

Mostly mitochondrial detail added There may be some new individuals added to OCG, LC and PN types (last bullet)

admclachlan commented 3 years ago

Using query "MATCH (n:Neuron) WHERE exists(n.type) return n.bodyId, n.instance, n.statusLabel, n.cropped" (only neuprint neurons with types), there were 22593 neurons in 1.1. In 1.2 there are 22704.

Clare72 commented 3 years ago

Some typing has changed: https://github.com/VirtualFlyBrain/hemibrain_metadata/blob/master/v1-1_to_v1-2_typing_changes.tsv

new types: 'LC33a', 'LC33b', 'OCG09', 'TRN_VP3a', 'TRN_VP3b' removed types: 'LC33', 'TRN_VP3'

Clare72 commented 3 years ago

112 new neurons (those with no type in 1.1) 1 removed neuron - 546303917 (no type in 1.2)

admclachlan commented 3 years ago

The typing changes match the 111 extra neurons in 1.2 vs 1.1. It looks like there are no other changes relevant to VFB so may not be necessary to reload everything? Will check if minimal metadata and connectivity is the same between 1.1 to 1.2 (except the new neurons) to determine if any other metadata will need updating.

Clare72 commented 3 years ago

are we going to have a new dataset for 1.2?