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VirtualFlyBrain / VFB_reporting

Scripts for reporting on the state of VFB content and pipeline
https://github.com/VirtualFlyBrain/VFB_reporting_results
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Extend CATMAID VFB comparison table to count all neurons directly annotated *only* with 'neuron' #17

Closed dosumis closed 4 years ago

dosumis commented 4 years ago

We need a way to quickly see the extend of annotation in this reporting table:

https://github.com/VirtualFlyBrain/VFB_reporting_results/blob/master/L1EM_comparison.tsv

Add a column that counts how many individuals are only directly typed as neuron. Sketch:

MATCH (s:Site)<-[]-(i:Individual)-[:INSTANCEOF]->(c:Class { label: neuron})  
WHERE site.label = ??? return i.short_form, i.label, c.label

Set site to one of two CATMAIDs. Use code to check whether only one classification for i.

dosumis commented 4 years ago

Hi Clare - can you commit to this for this next sprint?

Clare72 commented 4 years ago

Ok, will have a go. I see it is already in sprint_backlog

dosumis commented 4 years ago

Would be good to generate mapping tables for neurons with only general classification too - one per dataset + a set of cards on the data_staging board to track them. May be easiest if you write code for generating mapping tables at same time. Presumaby you could re-use code you wrote for generating list of new skids to map?