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VirtualFlyBrain / VFB_reporting

Scripts for reporting on the state of VFB content and pipeline
https://github.com/VirtualFlyBrain/VFB_reporting_results
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Script automated generation of linkout tables & posting to GitHub. #26

Closed dosumis closed 6 months ago

dosumis commented 4 years ago

These should follow FlyBase linkout table structure.

We may be able to re-use reporting infrastructure to do this.

Sketch of queries:

  1. Find all site nodes:
  2. Iterate over site nodes, pulling any dbxref link with an acc -> table for each site
  3. For links to individuals, generate thumbnail image link.

Images from classes are more of a challenge. May need to be custom script, as needed - or perhaps just configurable per Site.

dosumis commented 4 years ago

FyBase linkout examples (current VFB)

VFB_linkout.txt #FlyBase ID DBNAME DBID DBURL
FBtp0059415 VFB VFB_00021850 VFB_00021850

VFB_dbinfo.txt

DBNAME  VFB
BASEURL http://virtualflybrain.org/reports/
HOMEURL http://www.virtualflybrain.org/
DESC    A database to explore neuroanatomy, connectivity and gene expression
EMAIL   mmc46@cam.ac.uk

(Files on: ftp://ftp.flybase.org/flybase/linkout_providers/vfb/)

dosumis commented 4 years ago

(See https://github.com/VirtualFlyBrain/Management/issues/220)

admclachlan commented 6 months ago

closing, new FB > VFB linkouts enhancement issue https://github.com/VirtualFlyBrain/Management/issues/342