VirtualFlyBrain / VFB_reporting

Scripts for reporting on the state of VFB content and pipeline
https://github.com/VirtualFlyBrain/VFB_reporting_results
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Build basic lib to wrap OWLery queries. #7

Closed dosumis closed 4 years ago

dosumis commented 5 years ago

owlery tools -> init: (endpoint may be specified, if not, use default (http://owl.virtualflybrain.org/kbs/vfb, spec_obo_curies (by prefixes), spec curies (as dict))

-> Test connection.

wrap basic queries - with subClassOf being most important. Wrapping should deal with errors and return simple lists of iris.

Extensions: Take a name_id lookup and use this to support query by label.

dosumis commented 4 years ago

Done https://github.com/VirtualFlyBrain/VFB_reporting/blob/master/src/owlery_query_tools.py