Add has_subClasses flag

[dosumis]

Use case - driving query display

PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>

CONSTRUCT {
    ?x <http://n2o.neo/property/nodeLabel> "has_subClass" .
}
WHERE {
  ?y owl:subClassOf ?x . 
}

[dosumis]

For this to work, we need pre-reasoning to happen before the SPARQL. This is not currently the case. SPARQL runs on the triplestore.

It would work if we ran SPARQL construct using ROBOT after this stage: https://github.com/VirtualFlyBrain/vfb-pipeline-dumps/blob/vfb_pipeline/dumps.Makefile#L59]. I think this means that we need to either move all construct to work with derived files + ROBOT, or have just some of SPARQL run post-reasoning. These will need a different name scheme (right now, everything that starts with construct_ runs on the triple store.)

Also need to check whether product of construct_all.owl ends up in both Neo & SOLR (looks like it goes into SOLR via obographs.json goal.

CC @hkir-dev

[hkir-dev]

Neo4j2owl is processing these labels as well: https://github.com/VirtualFlyBrain/neo4j2owl/blob/migrate_neo4j_hk/src/main/java/ebi/spot/neo4j2owl/importer/N2OOntologyLoader.java#L381

I can start the implementation of ROBOT based construct files processing. I don't think it will cause any performance issues.

Ps: We should be careful about memory usage since ROBOT query is using jena afaik and reason is using owlapi. If we combine these functions there is a risk to use 2X memory. But it won't be a problem if we use separate processes to run these functions.

[dosumis]

New step should run after reasoning but before merge.

[dosumis]

Requires pipeline modification specified here: https://github.com/VirtualFlyBrain/vfb-pipeline-dumps/issues/48

[Robbie1977]

48 has now been merged