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VisionandCognition
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NHP-BIDS
Code for NHP-MRI (e.g., Retinotopy, Curve-tracing, Figure-ground) using NiPype and the BIDS format.
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Bump certifi from 2023.7.22 to 2024.7.4 in /code
#48
dependabot[bot]
closed
3 months ago
0
Bump urllib3 from 1.26.18 to 1.26.19 in /code
#47
dependabot[bot]
closed
4 months ago
0
Bump idna from 2.6 to 3.7 in /code
#46
dependabot[bot]
closed
6 months ago
0
Bump urllib3 from 1.26.17 to 1.26.18 in /code
#45
dependabot[bot]
closed
1 year ago
0
Bump urllib3 from 1.26.5 to 1.26.17 in /code
#44
dependabot[bot]
closed
1 year ago
0
Bump certifi from 2022.12.7 to 2023.7.22 in /code
#43
dependabot[bot]
closed
1 year ago
0
Bump pygments from 2.7.4 to 2.15.0 in /code
#42
dependabot[bot]
closed
1 year ago
0
Bump scipy from 0.19.1 to 1.10.0 in /code
#41
dependabot[bot]
closed
1 year ago
0
Bump ipython from 7.16.3 to 8.10.0 in /code
#40
dependabot[bot]
closed
1 year ago
0
Bump certifi from 2018.1.18 to 2022.12.7 in /code
#39
dependabot[bot]
closed
1 year ago
0
Bump lxml from 4.6.5 to 4.9.1 in /code
#38
dependabot[bot]
closed
2 years ago
0
Project separation for NIN Data Protocol
#37
pcklink
closed
3 months ago
2
Bump numpy from 1.21.0 to 1.22.0 in /code
#36
dependabot[bot]
closed
2 years ago
0
Bump numpy from 1.13.1 to 1.21.0 in /code
#35
dependabot[bot]
closed
2 years ago
0
Bump ipython from 6.1.0 to 7.16.3 in /code
#34
dependabot[bot]
closed
2 years ago
0
Bump lxml from 4.6.3 to 4.6.5 in /code
#33
dependabot[bot]
closed
2 years ago
0
Bump babel from 2.5.3 to 2.9.1 in /code
#32
dependabot[bot]
closed
3 years ago
0
Bump urllib3 from 1.24.2 to 1.26.5 in /code
#31
dependabot[bot]
closed
3 years ago
0
Use NMTv2 and implement distortion correction in workflow
#30
pcklink
closed
3 years ago
0
Bump py from 1.4.34 to 1.10.0 in /code
#29
dependabot[bot]
closed
3 years ago
0
Bump lxml from 4.6.2 to 4.6.3 in /code
#28
dependabot[bot]
closed
3 years ago
0
Bump pygments from 2.2.0 to 2.7.4 in /code
#27
dependabot[bot]
closed
3 years ago
0
Bump lxml from 3.8.0 to 4.6.2 in /code
#26
dependabot[bot]
closed
3 years ago
0
Permission issue
#25
pcklink
closed
4 years ago
4
Check log creation inside worflow / workingdir
#24
pcklink
closed
4 years ago
1
Split Level1 and Level2 GLM analysis
#23
pcklink
closed
3 years ago
3
Parallelize motion correction
#22
pcklink
closed
4 years ago
1
Allow combining runs with missing conditions/trials to modelfit
#21
pcklink
opened
4 years ago
5
Common space registration workflow needed
#20
pcklink
closed
4 years ago
3
Motion correction: Functional runs with differently sized nifti files
#19
pcklink
closed
4 years ago
5
Fix reference for motion correction Eddy with new implant
#18
pcklink
closed
4 years ago
2
There are still/again a whole bunch of folders on /cortalg without the correct group permissions. This means I cannot make a back to VS02. Please fix this!
#17
pcklink
closed
4 years ago
1
BIDS validation - Fix errors
#16
pcklink
closed
3 years ago
3
Code script name consistency
#15
pcklink
closed
5 years ago
0
Custom HRF
#14
pcklink
closed
5 years ago
1
Create a timeevents processer for FigGnd csv/tsv files
#13
pcklink
closed
5 years ago
2
CurveNoResponse ev in contrast giving errors
#12
nhpatscnin
closed
5 years ago
1
SurfSara changed their batch scheduler for LISA >> Adjust job-file templates
#11
pcklink
closed
5 years ago
3
LISA default permission values for new files
#10
pcklink
closed
6 years ago
1
modelfit - generic output folders
#9
pcklink
closed
5 years ago
2
bids_minimal_processing.py : filetypes
#8
pcklink
closed
5 years ago
3
FIX: curvetracing onsets
#7
mekman
closed
6 years ago
1
timeevents/curvetracing.py produces bogus timing onsets?
#6
mekman
closed
6 years ago
15
Pbs: batch submission for preprocess_workflow.py
#5
mekman
closed
6 years ago
0
NF: add job pbs file for bids-minimal_preprocessing.py
#4
mekman
closed
6 years ago
0
DOC: document which software versions are required, freesurfer, fsl, ants..
#3
mekman
closed
5 years ago
3
remove code/bids_templates.py
#2
mekman
closed
5 years ago
3
DOC: clarification of installation steps
#1
mekman
closed
6 years ago
0