When converting pytest_* to json, it loads nicely (thanks!) but does not find connection file (the file is under tests/connection_files/ in the CxSystem2 repo -- in BUI it says it should be in workspace...?):
(CX2) sivanni@dx6-neuromancer:/opt3/CX2_wrkdir$ cxserver
Server configuration file not found, logging to console only
Server configuration file not found, logging to console only
Performing system checks...
System check identified no issues (0 silenced).
December 10, 2019 - 17:08:44
Django version 2.2.7, using settings 'cx_bui.settings'
Starting development server at http://127.0.0.1:41869/
Quit the server with CONTROL-C.
/opt2/Laskenta_models_on_ssd/CxSystem2/cxsystem2
Current run filename suffix is: 20191210_1709200
The system is running with euler integration method
Creating an input based on the central 60 neurons ...
Neuron model is EIF
Customized VPM neuron in layer 0 initialized with 60 neurons.
Customized PC neuron in layer [4, 1] initialized with 267 neurons.
Customized PC neuron in layer [4, 1] initialized with 109 neurons.
Neuron model is EIF
Customized SS neuron in layer 4 initialized with 40 neurons.
Neuron model is EIF
Customized BC neuron in layer 4 initialized with 32 neurons.
Neuron model is EIF
Customized MC neuron in layer 4 initialized with 13 neurons.
Process spawned_CxSystem:
Traceback (most recent call last):
File "/opt2/Software/miniconda3/envs/CX2/lib/python3.7/multiprocessing/process.py", line 297, in _bootstrap
self.run()
File "/opt2/Software/miniconda3/envs/CX2/lib/python3.7/multiprocessing/process.py", line 99, in run
self._target(*self._args, **self._kwargs)
File "/opt2/Laskenta_models_on_ssd/CxSystem2/cxsystem2/bui/cx_bui/editor/views.py", line 77, in cxspawner
cm = Cx(anatomy, physiology)
File "/opt2/Laskenta_models_on_ssd/CxSystem2/cxsystem2/core/cxsystem.py", line 305, in init
self.configuration_executor()
File "/opt2/Laskenta_models_on_ssd/CxSystem2/cxsystem2/core/cxsystem.py", line 341, in configuration_executor
self.parameter_to_method_mapping[self.anat_and_sys_conf_df.loc[self.value_line_idx, 0]][1]()
File "/opt2/Laskenta_models_on_ssd/CxSystem2/cxsystem2/core/cxsystem.py", line 1370, in synapse
self.set_import_connections_path()
File "/opt2/Laskenta_models_on_ssd/CxSystem2/cxsystem2/core/cxsystem.py", line 570, in set_import_connections_path
self.imported_connections = self.workspace.import_connections()
File "/opt2/Laskenta_models_on_ssd/CxSystem2/cxsystem2/core/workspace_manager.py", line 99, in import_connections
raise FileNotFoundError(' - Connection file not found: {}'.format(self.imported_connections_path.as_posix()))
FileNotFoundError: - Connection file not found: tests/connection_files/connections_20190517_06115909_python_200ms.gz
When converting pytest_* to json, it loads nicely (thanks!) but does not find connection file (the file is under tests/connection_files/ in the CxSystem2 repo -- in BUI it says it should be in workspace...?): (CX2) sivanni@dx6-neuromancer:/opt3/CX2_wrkdir$ cxserver Server configuration file not found, logging to console only Server configuration file not found, logging to console only Performing system checks...
System check identified no issues (0 silenced). December 10, 2019 - 17:08:44 Django version 2.2.7, using settings 'cx_bui.settings' Starting development server at http://127.0.0.1:41869/ Quit the server with CONTROL-C. /opt2/Laskenta_models_on_ssd/CxSystem2/cxsystem2