Hey Meena,
I recently ran into an issue with the SpectronauttoMSstatsFormat function. It can't find the column EG.ModifiedSequence because it has been replaced with a new name in Spetronaut report, EG.ModifiedPeptide. I assume they changed the name in their newer version.
Cheers,
Jonas
Wollscheid Lab.
Hey Meena, I recently ran into an issue with the SpectronauttoMSstatsFormat function. It can't find the column EG.ModifiedSequence because it has been replaced with a new name in Spetronaut report, EG.ModifiedPeptide. I assume they changed the name in their newer version. Cheers, Jonas Wollscheid Lab.